Sediminicola sp. YIK13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sediminicola

Description

Sediminicola sp. YIK13 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP010535.1, allowing for its identification and further study in genomic databases. As a member of the Sediminicola genus, this organism is likely to inhabit sedimentary environments. Bacteria in this genus are typically associated with the degradation of organic materials and may play a role in nutrient cycling within their ecosystems. The rod shape of Sediminicola sp. YIK13 may confer advantages in mobility or colonization of various substrates, contributing to its ecological role in sedimentary habitats. Understanding the characteristics of Sediminicola sp. YIK13 can provide insights into the ecological functions of sediment-dwelling microorganisms. Their ability to decompose organic matter not only aids in nutrient recycling but also influences sediment structure and stability. Further exploration of this strain may reveal its potential applications in bioremediation or environmental monitoring, highlighting the importance of such microorganisms in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSediminicola
SpeciesSediminicola sp. YIK13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminicola sp. YIK13 isolate Sediment chromosome, complete

Gene Summary

Adenine Count

1084088 bp

Thymine Count

1079039 bp

Guanine Count

705413 bp

Cytosine Count

701267 bp

Genome Length

3569807 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsq/divibSB49_RS15450Not AvailablePositive3495339 - 349605827715.9
cell division protein ftsaSB49_RS15455Not AvailablePositive3496062 - 349739348282.8
cell division protein ftszSB49_RS15460Not AvailablePositive3497441 - 349942373262.1
gatb/yqey domain-containing proteinSB49_RS15465Not AvailablePositive3499525 - 349997416150.6
Trna-argNot AvailableNot AvailablePositive3499992 - 3500065Not Available
ycei family proteinSB49_RS15475Not AvailableNegative3500447 - 350104922544.2
ypda family putative bacillithiol disulfide reductaseSB49_RS15480Not AvailableNegative3501296 - 350227336540.8
ribulose-phosphate 3-epimeraseSB49_RS15485Not AvailableNegative3502276 - 350293524067.9
dead/deah box helicaseSB49_RS15490Not AvailableNegative3503067 - 350430546333.2
nmra/hscarg family proteinSB49_RS15495Not AvailablePositive3505091 - 350606535816.9

Displaying genes 3101 – 3110 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.