Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | SB49_RS13800 | Not Available | Negative | 3086945 - 3087958 | 37705.2 |
| tyrosine--trna ligase | SB49_RS13805 | Not Available | Positive | 3088143 - 3089438 | 48251.6 |
| quercetin 2,3-dioxygenase | SB49_RS13810 | Not Available | Negative | 3089507 - 3090046 | 19721.1 |
| acyl transferase | SB49_RS13815 | Not Available | Negative | 3090283 - 3091260 | 36600.3 |
| t9ss type a sorting domain-containing protein | SB49_RS13820 | Not Available | Negative | 3091361 - 3091684 | 12163.0 |
| t9ss type a sorting domain-containing protein | SB49_RS13825 | Not Available | Negative | 3091865 - 3092173 | 11388.2 |
| hypothetical protein | SB49_RS13830 | Not Available | Negative | 3092315 - 3093541 | 42664.8 |
| tonb-dependent receptor | SB49_RS13835 | Not Available | Negative | 3093580 - 3096447 | 106212.0 |
| response regulator transcription factor | SB49_RS13840 | Not Available | Positive | 3096629 - 3097315 | 25525.2 |
| cell wall metabolism sensor histidine kinase walk | SB49_RS13845 | Not Available | Positive | 3097315 - 3098370 | 40419.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
