Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| omph family outer membrane protein | SB49_RS12140 | Not Available | Positive | 2736385 - 2736891 | 19046.0 |
| lyse family translocator | SB49_RS12145 | Not Available | Negative | 2736941 - 2737606 | 24649.6 |
| head gin domain-containing protein | SB49_RS12150 | Not Available | Negative | 2737613 - 2738293 | 24820.0 |
| ribonuclease r | SB49_RS12155 | Not Available | Negative | 2738352 - 2740538 | 83544.4 |
| ribose 5-phosphate isomerase b | SB49_RS12160 | Not Available | Positive | 2741167 - 2741598 | 15735.8 |
| gnat family n-acetyltransferase | SB49_RS12165 | Not Available | Positive | 2741669 - 2742112 | 16980.3 |
| hypothetical protein | SB49_RS12170 | Not Available | Negative | 2742157 - 2742531 | 14569.7 |
| hopj type iii effector protein | SB49_RS12175 | Not Available | Positive | 2742745 - 2743089 | 13115.6 |
| mbl fold metallo-hydrolase | SB49_RS12180 | Not Available | Negative | 2743095 - 2744084 | 37071.9 |
| pentapeptide repeat-containing protein | SB49_RS12185 | Not Available | Negative | 2744074 - 2744646 | 21979.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
