Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system ywqk family antitoxin | SB49_RS11115 | Not Available | Negative | 2491580 - 2491930 | 12964.4 |
| aspartate--trna ligase | SB49_RS11120 | Not Available | Positive | 2492210 - 2493964 | 66317.3 |
| chloride channel protein | SB49_RS11125 | Not Available | Positive | 2494024 - 2495808 | 65373.3 |
| hypothetical protein | SB49_RS11130 | Not Available | Positive | 2495817 - 2496074 | 9642.28 |
| cold-shock protein | SB49_RS11135 | Not Available | Positive | 2496160 - 2496354 | 6909.04 |
| nucleoside deaminase | SB49_RS11140 | Not Available | Negative | 2496436 - 2496885 | 16570.0 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SB49_RS11145 | Not Available | Positive | 2496960 - 2498723 | 64458.6 |
| duf3078 domain-containing protein | SB49_RS11150 | Not Available | Positive | 2498710 - 2499849 | 43821.6 |
| dgtp triphosphohydrolase | SB49_RS11155 | Not Available | Negative | 2499846 - 2501192 | 50874.7 |
| porin | SB49_RS11160 | Not Available | Positive | 2501565 - 2502770 | 45196.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
