Sediminicola sp. YIK13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sediminicola

Description

Sediminicola sp. YIK13 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP010535.1, allowing for its identification and further study in genomic databases. As a member of the Sediminicola genus, this organism is likely to inhabit sedimentary environments. Bacteria in this genus are typically associated with the degradation of organic materials and may play a role in nutrient cycling within their ecosystems. The rod shape of Sediminicola sp. YIK13 may confer advantages in mobility or colonization of various substrates, contributing to its ecological role in sedimentary habitats. Understanding the characteristics of Sediminicola sp. YIK13 can provide insights into the ecological functions of sediment-dwelling microorganisms. Their ability to decompose organic matter not only aids in nutrient recycling but also influences sediment structure and stability. Further exploration of this strain may reveal its potential applications in bioremediation or environmental monitoring, highlighting the importance of such microorganisms in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSediminicola
SpeciesSediminicola sp. YIK13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminicola sp. YIK13 isolate Sediment chromosome, complete

Gene Summary

Adenine Count

1084088 bp

Thymine Count

1079039 bp

Guanine Count

705413 bp

Cytosine Count

701267 bp

Genome Length

3569807 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toxin-antitoxin system ywqk family antitoxinSB49_RS11115Not AvailableNegative2491580 - 249193012964.4
aspartate--trna ligaseSB49_RS11120Not AvailablePositive2492210 - 249396466317.3
chloride channel proteinSB49_RS11125Not AvailablePositive2494024 - 249580865373.3
hypothetical proteinSB49_RS11130Not AvailablePositive2495817 - 24960749642.28
cold-shock proteinSB49_RS11135Not AvailablePositive2496160 - 24963546909.04
nucleoside deaminaseSB49_RS11140Not AvailableNegative2496436 - 249688516570.0
1-deoxy-d-xylulose-5-phosphate synthaseSB49_RS11145Not AvailablePositive2496960 - 249872364458.6
duf3078 domain-containing proteinSB49_RS11150Not AvailablePositive2498710 - 249984943821.6
dgtp triphosphohydrolaseSB49_RS11155Not AvailableNegative2499846 - 250119250874.7
porinSB49_RS11160Not AvailablePositive2501565 - 250277045196.6

Displaying genes 2231 – 2240 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.