Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | SB49_RS10460 | Not Available | Positive | 2356338 - 2357963 | 62721.3 |
| ligase-associated dna damage response dexh box helicase | SB49_RS10465 | Not Available | Positive | 2357956 - 2360421 | 94260.8 |
| ligase-associated dna damage response endonuclease pdem | SB49_RS10470 | Not Available | Positive | 2360572 - 2361213 | 24447.8 |
| aminotransferase class v-fold plp-dependent enzyme | SB49_RS10475 | Not Available | Positive | 2361216 - 2362373 | 44334.1 |
| transcription-repair coupling factor | SB49_RS10480 | Not Available | Positive | 2362431 - 2365808 | 128572.0 |
| redoxin domain-containing protein | SB49_RS10485 | Not Available | Positive | 2365873 - 2367198 | 50168.6 |
| aspartate kinase | SB49_RS10490 | Not Available | Negative | 2367215 - 2367874 | 24781.1 |
| yran family protein | SB49_RS10495 | Not Available | Negative | 2368132 - 2368491 | 13698.5 |
| duf1800 domain-containing protein | SB49_RS10500 | Not Available | Positive | 2368657 - 2370195 | 58021.8 |
| duf1501 domain-containing protein | SB49_RS10505 | Not Available | Positive | 2370207 - 2371898 | 62541.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
