Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | SB49_RS10160 | Not Available | Negative | 2288919 - 2289236 | 11417.7 |
| dna polymerase iii subunit alpha | SB49_RS10165 | Not Available | Negative | 2289361 - 2293746 | 166171.0 |
| pa2169 family four-helix-bundle protein | SB49_RS10170 | Not Available | Negative | 2293903 - 2294370 | 17915.2 |
| 30s ribosomal protein s16 | SB49_RS10175 | Not Available | Positive | 2294641 - 2295195 | 19824.2 |
| ribosome maturation factor rimm | SB49_RS10180 | Not Available | Positive | 2295211 - 2295738 | 19907.0 |
| set domain-containing protein | SB49_RS10185 | Not Available | Positive | 2295854 - 2296441 | 22774.0 |
| trna1(val) (adenine(37)-n6)-methyltransferase | SB49_RS10190 | Not Available | Positive | 2296681 - 2297394 | 27027.8 |
| dimethylarginine dimethylaminohydrolase family protein | SB49_RS10195 | Not Available | Negative | 2297396 - 2298274 | 32726.5 |
| amino acid permease | SB49_RS10200 | Not Available | Negative | 2298285 - 2299601 | 46641.1 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | SB49_RS10205 | Not Available | Positive | 2299679 - 2300773 | 42651.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
