Sediminicola sp. YIK13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sediminicola

Description

Sediminicola sp. YIK13 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP010535.1, allowing for its identification and further study in genomic databases. As a member of the Sediminicola genus, this organism is likely to inhabit sedimentary environments. Bacteria in this genus are typically associated with the degradation of organic materials and may play a role in nutrient cycling within their ecosystems. The rod shape of Sediminicola sp. YIK13 may confer advantages in mobility or colonization of various substrates, contributing to its ecological role in sedimentary habitats. Understanding the characteristics of Sediminicola sp. YIK13 can provide insights into the ecological functions of sediment-dwelling microorganisms. Their ability to decompose organic matter not only aids in nutrient recycling but also influences sediment structure and stability. Further exploration of this strain may reveal its potential applications in bioremediation or environmental monitoring, highlighting the importance of such microorganisms in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSediminicola
SpeciesSediminicola sp. YIK13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminicola sp. YIK13 isolate Sediment chromosome, complete

Gene Summary

Adenine Count

1084088 bp

Thymine Count

1079039 bp

Guanine Count

705413 bp

Cytosine Count

701267 bp

Genome Length

3569807 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urocanate hydrataseSB49_RS10010Not AvailablePositive2258317 - 226032674613.9
mfs transporterSB49_RS10015Not AvailablePositive2260523 - 226184248197.7
formimidoylglutamaseSB49_RS10020Not AvailablePositive2261899 - 226288536710.6
homogentisate 1,2-dioxygenaseSB49_RS10025Not AvailableNegative2262867 - 226402444662.2
nad(p)/fad-dependent oxidoreductaseSB49_RS10035Not AvailableNegative2264324 - 226560147994.3
hypothetical proteinSB49_RS10040Not AvailablePositive2265819 - 226702445423.9
hypothetical proteinSB49_RS10045Not AvailablePositive2267091 - 22673218836.87
universal stress proteinSB49_RS10050Not AvailableNegative2267311 - 226821333846.1
heavy metal translocating p-type atpase metal-binding domain-containing proteinSB49_RS10055Not AvailablePositive2268403 - 227077888731.1
cbb3-type cytochrome oxidase assembly protein ccosSB49_RS10060Not AvailablePositive2270883 - 22710867615.19

Displaying genes 2011 – 2020 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.