Sediminicola sp. YIK13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sediminicola

Description

Sediminicola sp. YIK13 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP010535.1, allowing for its identification and further study in genomic databases. As a member of the Sediminicola genus, this organism is likely to inhabit sedimentary environments. Bacteria in this genus are typically associated with the degradation of organic materials and may play a role in nutrient cycling within their ecosystems. The rod shape of Sediminicola sp. YIK13 may confer advantages in mobility or colonization of various substrates, contributing to its ecological role in sedimentary habitats. Understanding the characteristics of Sediminicola sp. YIK13 can provide insights into the ecological functions of sediment-dwelling microorganisms. Their ability to decompose organic matter not only aids in nutrient recycling but also influences sediment structure and stability. Further exploration of this strain may reveal its potential applications in bioremediation or environmental monitoring, highlighting the importance of such microorganisms in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSediminicola
SpeciesSediminicola sp. YIK13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminicola sp. YIK13 isolate Sediment chromosome, complete

Gene Summary

Adenine Count

1084088 bp

Thymine Count

1079039 bp

Guanine Count

705413 bp

Cytosine Count

701267 bp

Genome Length

3569807 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining protein mrecSB49_RS09650Not AvailablePositive2168400 - 216921830655.9
penicillin-binding protein 2SB49_RS09660Not AvailablePositive2169713 - 217158170354.5
rod shape-determining protein rodaSB49_RS09665Not AvailablePositive2171571 - 217285448470.4
dna/rna non-specific endonucleaseSB49_RS09670Not AvailableNegative2172851 - 217365131182.8
carboxy terminal-processing peptidaseSB49_RS09675Not AvailableNegative2173744 - 217587381530.1
5'/3'-nucleotidase sureSB49_RS09680Not AvailablePositive2176087 - 217686628467.8
hypothetical proteinSB49_RS09685Not AvailablePositive2176859 - 217714010275.0
lipid-a-disaccharide synthaseSB49_RS09690Not AvailablePositive2177163 - 217827542045.3
c40 family peptidaseSB49_RS09695Not AvailablePositive2178321 - 217889921172.2
comec/rec2 family competence proteinSB49_RS09700Not AvailablePositive2178889 - 218091076013.6

Displaying genes 1941 – 1950 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.