Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd | SB49_RS07355 | Not Available | Negative | 1655030 - 1655713 | 26149.1 |
| duf4920 domain-containing protein | SB49_RS07360 | Not Available | Negative | 1655715 - 1656218 | 18861.6 |
| branched-chain amino acid aminotransferase | SB49_RS07365 | Not Available | Positive | 1656325 - 1657389 | 39751.3 |
| nucleoside triphosphate pyrophosphohydrolase family protein | SB49_RS07370 | Not Available | Negative | 1657434 - 1657823 | 14763.8 |
| hypothetical protein | SB49_RS07380 | Not Available | Positive | 1658170 - 1658349 | 6504.01 |
| fluoride efflux transporter crcb | SB49_RS07385 | Not Available | Positive | 1658367 - 1658738 | 13472.8 |
| p-ii family nitrogen regulator | SB49_RS07390 | Not Available | Positive | 1659026 - 1659364 | 12688.0 |
| ammonium transporter | SB49_RS07395 | Not Available | Positive | 1659395 - 1660639 | 43649.6 |
| porin | SB49_RS07400 | Not Available | Positive | 1660764 - 1661810 | 37381.2 |
| duf1684 domain-containing protein | SB49_RS07405 | Not Available | Negative | 1661874 - 1662521 | 24799.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
