Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Sediminicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Flavobacteriaceae |
| Genus | Sediminicola |
| Species | Sediminicola sp. YIK13 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1084088 bp
Thymine Count
1079039 bp
Guanine Count
705413 bp
Cytosine Count
701267 bp
Genome Length
3569807 bp
Protein-coding Genes
3114 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent aminotransferase | SB49_RS00645 | Not Available | Negative | 136330 - 137520 | 43871.8 |
| pdz domain-containing protein | SB49_RS00650 | Not Available | Positive | 137672 - 139006 | 49651.6 |
| duf1573 domain-containing protein | SB49_RS00655 | Not Available | Negative | 139050 - 139424 | 13293.4 |
| valine--trna ligase | SB49_RS00660 | Not Available | Positive | 139626 - 142256 | 100999.0 |
| l-dopachrome tautomerase-related protein | SB49_RS00665 | Not Available | Positive | 142428 - 143501 | 39654.0 |
| hypothetical protein | SB49_RS00670 | Not Available | Positive | 143653 - 144246 | 21570.3 |
| sdr family nad(p)-dependent oxidoreductase | SB49_RS00675 | Not Available | Positive | 144422 - 145993 | 59617.4 |
| doxx family protein | SB49_RS00680 | Not Available | Negative | 146050 - 146481 | 16186.6 |
| sensor histidine kinase kdpd | SB49_RS00685 | Not Available | Positive | 146756 - 148036 | 48814.5 |
| response regulator transcription factor | SB49_RS00690 | Not Available | Positive | 148020 - 148721 | 26760.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
