Sediminicola sp. YIK13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Sediminicola

Description

Sediminicola sp. YIK13 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP010535.1, allowing for its identification and further study in genomic databases. As a member of the Sediminicola genus, this organism is likely to inhabit sedimentary environments. Bacteria in this genus are typically associated with the degradation of organic materials and may play a role in nutrient cycling within their ecosystems. The rod shape of Sediminicola sp. YIK13 may confer advantages in mobility or colonization of various substrates, contributing to its ecological role in sedimentary habitats. Understanding the characteristics of Sediminicola sp. YIK13 can provide insights into the ecological functions of sediment-dwelling microorganisms. Their ability to decompose organic matter not only aids in nutrient recycling but also influences sediment structure and stability. Further exploration of this strain may reveal its potential applications in bioremediation or environmental monitoring, highlighting the importance of such microorganisms in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusSediminicola
SpeciesSediminicola sp. YIK13
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sediminicola sp. YIK13 isolate Sediment chromosome, complete

Gene Summary

Adenine Count

1084088 bp

Thymine Count

1079039 bp

Guanine Count

705413 bp

Cytosine Count

701267 bp

Genome Length

3569807 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yigz family proteinSB49_RS05440Not AvailablePositive1220480 - 122110023427.2
thioesterase family proteinSB49_RS05445Not AvailableNegative1221107 - 122150515503.1
chromosomal replication initiator protein dnaaSB49_RS05450Not AvailablePositive1221713 - 122313754045.1
low molecular weight protein-tyrosine-phosphataseSB49_RS05455Not AvailablePositive1223147 - 122360517201.6
sam-dependent methyltransferaseSB49_RS05460Not AvailablePositive1223615 - 122434026890.9
hypothetical proteinSB49_RS05465Not AvailableNegative1224390 - 122499222366.2
endolytic transglycosylase mltgSB49_RS05470Not AvailableNegative1225178 - 122622139854.8
gnat family n-acetyltransferaseSB49_RS05475Not AvailableNegative1226221 - 122674519924.9
diaminopimelate epimeraseSB49_RS05480Not AvailableNegative1226739 - 122751528226.5
s1c family serine proteaseSB49_RS05485Not AvailablePositive1227648 - 122904549734.3

Displaying genes 1101 – 1110 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.