Pseudomonas plecoglossicida strain NyZ12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas plecoglossicida strain NyZ12 is a notable bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which contributes to its genetic stability and adaptability in its ecological niche. The accession number for this strain is NZ_CP010359.1, which provides a reference for genetic and genomic studies. The presence of Pseudomonas plecoglossicida in soil environments suggests its potential role in nutrient cycling and soil health. This bacterium could be involved in various ecological processes, such as the degradation of organic matter and the interaction with other soil microorganisms. Understanding the specific functions and interactions of strain NyZ12 within its habitat could provide insights into its ecological significance and contributions to soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas plecoglossicida
Strainstrain NyZ12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas plecoglossicida strain NyZ12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil environments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas plecoglossicida strain NyZ12 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alphaRK21_RS21320Not AvailablePositive4667261 - 466823834607.0
alpha-ketoacid dehydrogenase subunit betaRK21_RS21325Not AvailablePositive4668272 - 466929436532.0
acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunitRK21_RS21330Not AvailablePositive4669291 - 467039739528.3
2,3-butanediol dehydrogenaseRK21_RS21335Not AvailablePositive4670450 - 467151437324.4
c13 family peptidaseRK21_RS21340Not AvailablePositive4672220 - 467395362895.1
oxidoreductaseRK21_RS21345Not AvailablePositive4673981 - 467462523603.8
ycek/yidq family lipoproteinRK21_RS21350Not AvailableNegative4674734 - 46750219691.06
flavin prenyltransferase ubixRK21_RS21355Not AvailableNegative4675018 - 467564722627.5
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseRK21_RS21360Not AvailableNegative4675644 - 467699348187.6
sigma-54-dependent fis family transcriptional regulatorRK21_RS21365Not AvailableNegative4677060 - 467904873322.5

Displaying genes 4401 – 4410 of 5781 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.