Pseudomonas plecoglossicida strain NyZ12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas plecoglossicida strain NyZ12 is a notable bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which contributes to its genetic stability and adaptability in its ecological niche. The accession number for this strain is NZ_CP010359.1, which provides a reference for genetic and genomic studies. The presence of Pseudomonas plecoglossicida in soil environments suggests its potential role in nutrient cycling and soil health. This bacterium could be involved in various ecological processes, such as the degradation of organic matter and the interaction with other soil microorganisms. Understanding the specific functions and interactions of strain NyZ12 within its habitat could provide insights into its ecological significance and contributions to soil ecosystems.

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Pseudomonadales
Family	Pseudomonadaceae
Genus	Pseudomonas
Species	Pseudomonas plecoglossicida
Strain	strain NyZ12

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	Not Available

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	soil environments
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Pseudomonas plecoglossicida strain NyZ12 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
1,2-phenylacetyl-coa epoxidase subunit paab	RK21_RS09495	Not Available	Negative	2134335 - 2134616	10410.2
1,2-phenylacetyl-coa epoxidase subunit paaa	RK21_RS09500	Not Available	Negative	2134642 - 2135631	37824.1
phenylacetate--coa ligase paak	RK21_RS09505	Not Available	Negative	2135880 - 2137199	49399.4
3-oxoadipyl-coa thiolase	RK21_RS09510	Not Available	Negative	2137321 - 2138541	42431.3
hydroxyphenylacetyl-coa thioesterase paai	RK21_RS09515	Not Available	Negative	2138534 - 2138974	15678.7
3-hydroxyacyl-coa dehydrogenase paah	RK21_RS09520	Not Available	Negative	2138967 - 2140484	53186.9
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paag	RK21_RS09525	Not Available	Negative	2140487 - 2141278	28647.5
2,3-dehydroadipyl-coa hydratase paaf	RK21_RS09530	Not Available	Negative	2141313 - 2142086	27199.1
phenylacetic acid degradation protein paay	RK21_RS09535	Not Available	Positive	2142442 - 2143041	21209.6
phenylacetic acid degradation operon negative regulatory protein paax	RK21_RS09540	Not Available	Positive	2143119 - 2144042	35161.1