Geoalkalibacter subterraneus strain Red1

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Geoalkalibacteraceae

Genus

Geoalkalibacter

Description

Geoalkalibacter subterraneus strain Red1 is a notable microorganism characterized by two replicons, with its genomic information accessible through the accession numbers NZ_CP010312.1 and NZ_CP010311.1. This strain is a member of the Geoalkalibacter genus, which is recognized for its metabolic capabilities in alkaline environments. The presence of two replicons in Geoalkalibacter subterraneus strain Red1 suggests a level of genomic complexity that may contribute to its adaptability and functionality in specific ecological niches. The strain is likely to possess unique metabolic pathways that enable it to thrive in alkaline conditions, potentially playing a role in biogeochemical cycles such as carbon or nitrogen cycling in its native habitat. Understanding the genomic architecture of Geoalkalibacter subterraneus strain Red1 through its accessions provides insights into its evolutionary strategies and ecological interactions. The dual-replicon structure may facilitate horizontal gene transfer and enhance its adaptability to environmental changes, which could be significant in the context of microbial ecology and the biogeochemical processes in alkaline ecosystems. Overall, the characteristics of this strain highlight its potential importance in studying microbial life in extreme environments and its role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyGeoalkalibacteraceae
GenusGeoalkalibacter
SpeciesGeoalkalibacter subterraneus
Strainstrain Red1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geoalkalibacter subterraneus strain Red1 chromosome, complete

Gene Summary

Adenine Count

737596 bp

Thymine Count

755237 bp

Guanine Count

995516 bp

Cytosine Count

987174 bp

Genome Length

3475523 bp

Protein-coding Genes

3219 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent zinc metalloprotease ftshGSUB_RS10530Not AvailableNegative2266414 - 226827368927.9
zf-tfiib domain-containing proteinGSUB_RS10535Not AvailableNegative2268406 - 226871712437.9
crispr system precrrna processing endoribonuclease ramp protein cas6GSUB_RS10540Not AvailableNegative2268814 - 226975235556.8
trna guanosine(34) transglycosylase tgtGSUB_RS10545Not AvailablePositive2269918 - 227103041511.9
septal ring lytic transglycosylase rlpa family proteinGSUB_RS10550Not AvailableNegative2271092 - 227185328220.5
acetyl-coa carboxylase carboxyl transferase subunit alphaGSUB_RS10555Not AvailableNegative2271988 - 227294735883.2
dna polymerase iii subunit alphaGSUB_RS10560Not AvailableNegative2272991 - 2276461129622.0
nucleoside triphosphate pyrophosphataseGSUB_RS10565Not AvailableNegative2276672 - 227728022670.6
atp-binding cassette domain-containing proteinGSUB_RS20110Not AvailablePositive2277489 - 22777108147.25
hypothetical proteinGSUB_RS10575Not AvailableNegative2277915 - 227834615632.0

Displaying genes 2211 – 2220 of 3629 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.