Geoalkalibacter subterraneus strain Red1

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Geoalkalibacteraceae

Genus

Geoalkalibacter

Description

Geoalkalibacter subterraneus strain Red1 is a notable microorganism characterized by two replicons, with its genomic information accessible through the accession numbers NZ_CP010312.1 and NZ_CP010311.1. This strain is a member of the Geoalkalibacter genus, which is recognized for its metabolic capabilities in alkaline environments. The presence of two replicons in Geoalkalibacter subterraneus strain Red1 suggests a level of genomic complexity that may contribute to its adaptability and functionality in specific ecological niches. The strain is likely to possess unique metabolic pathways that enable it to thrive in alkaline conditions, potentially playing a role in biogeochemical cycles such as carbon or nitrogen cycling in its native habitat. Understanding the genomic architecture of Geoalkalibacter subterraneus strain Red1 through its accessions provides insights into its evolutionary strategies and ecological interactions. The dual-replicon structure may facilitate horizontal gene transfer and enhance its adaptability to environmental changes, which could be significant in the context of microbial ecology and the biogeochemical processes in alkaline ecosystems. Overall, the characteristics of this strain highlight its potential importance in studying microbial life in extreme environments and its role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyGeoalkalibacteraceae
GenusGeoalkalibacter
SpeciesGeoalkalibacter subterraneus
Strainstrain Red1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geoalkalibacter subterraneus strain Red1 chromosome, complete

Gene Summary

Adenine Count

737596 bp

Thymine Count

755237 bp

Guanine Count

995516 bp

Cytosine Count

987174 bp

Genome Length

3475523 bp

Protein-coding Genes

3219 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseGSUB_RS04970Not AvailablePositive1118530 - 111941431635.2
type iv-a pilus assembly atpase pilbGSUB_RS04975Not AvailablePositive1119478 - 112117862992.6
type iv pilus twitching motility protein piltGSUB_RS04980Not AvailablePositive1121454 - 112257241494.6
type ii secretion system f family proteinGSUB_RS04985Not AvailablePositive1122603 - 112382043897.4
two-component system sensor histidine kinase ntrbGSUB_RS04990Not AvailablePositive1123835 - 112548761031.1
sigma-54-dependent transcriptional regulatorGSUB_RS04995Not AvailablePositive1125534 - 112693152061.8
type ii toxin-antitoxin system phd/yefm family antitoxinGSUB_RS05000Not AvailablePositive1127302 - 112757110204.9
type ii toxin-antitoxin system yafq family toxinGSUB_RS05005Not AvailablePositive1127573 - 112784810676.1
putative toxin-antitoxin system toxin component, pin familyGSUB_RS05010Not AvailableNegative1127894 - 112831915331.6
fita-like ribbon-helix-helix domain-containing proteinGSUB_RS05015Not AvailableNegative1128316 - 11285559046.96

Displaying genes 1121 – 1130 of 3629 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.