Hafnia alvei FB1

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Hafnia

Description

Hafnia alvei FB1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic metabolism. This organism is notable for possessing a single replicon, which is a defining feature of its genomic structure. The strain is cataloged under the accession number NZ_CP009706.1, indicating its genetic sequence is available for further study and reference. As a facultative anaerobe, Hafnia alvei FB1 demonstrates versatility in its oxygen requirements, allowing it to thrive in both aerobic and anaerobic environments. This adaptability may contribute to its ecological success in various habitats, including those that are nutrient-rich and may fluctuate in oxygen availability. In terms of ecological implications, the presence of Hafnia alvei FB1 in microbiomes could influence nutrient cycling and microbial community dynamics. Its ability to utilize different metabolic pathways in varying oxygen conditions suggests that it may play a role in the degradation of organic matter or in interactions with other microbial species. Understanding the functional capabilities of Hafnia alvei FB1 can provide insights into its role within its ecological niche, particularly in environments where oxygen levels are variable.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusHafnia
SpeciesHafnia alvei
StrainFB1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Hafnia alvei FB1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hafnia alvei FB1 chromosome, complete genome.

Gene Summary

Adenine Count

1202483 bp

Thymine Count

1201463 bp

Guanine Count

1150863 bp

Cytosine Count

1157912 bp

Genome Length

4712721 bp

Protein-coding Genes

4001 genes

Non-Coding Genes

353 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitAT03_RS08715Not AvailablePositive1901872 - 190237218482.1
type vi secretion system contractile sheath large subunitAT03_RS08720Not AvailablePositive1902398 - 190395157841.6
type vi secretion system baseplate subunit tsskAT03_RS08725Not AvailablePositive1903970 - 190531949797.1
type vi secretion system protein tssl, short formAT03_RS08730Not AvailablePositive1905316 - 190597524999.2
ompa family proteinAT03_RS08735Not AvailablePositive1905988 - 190769762450.5
hcp family type vi secretion system effectorAT03_RS08740Not AvailablePositive1907785 - 190827618591.9
type vi secretion system atpase tsshAT03_RS08745Not AvailablePositive1908484 - 1911219100109.0
type vi secretion system vgr family proteinAT03_RS08750Not AvailablePositive1911213 - 191374493480.4
duf3274 domain-containing proteinAT03_RS08755Not AvailablePositive1913737 - 191588780594.1
hypothetical proteinAT03_RS08760Not AvailablePositive1915901 - 191677033274.2

Displaying genes 1981 – 1990 of 4354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.