Methanosarcina siciliae C2J

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina siciliae C2J is a coccoid-shaped archaeon known for its role in methanogenesis, a process critical to the global carbon cycle. This organism possesses flagella, which may aid in mobility and environmental adaptation. It has a single replicon, which is indicative of its genomic organization. The genome of M. siciliae C2J is accessible under the accession number NZ_CP009508.1, providing a resource for further genomic studies and insights into its metabolic pathways. As a member of the Methanosarcina genus, this archaeon is likely involved in the degradation of organic matter, contributing to methane production in anaerobic environments. Ecologically, M. siciliae C2J plays a significant role in environments where organic material is abundant and oxygen is limited, such as wetlands, sediments, and the digestive systems of ruminants. By facilitating the conversion of organic compounds into methane, this species not only aids in nutrient cycling but also influences greenhouse gas emissions. Understanding M. siciliae C2J's characteristics and behaviors can provide valuable insights into methane production dynamics and the overall function of microbial communities in various ecosystems.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina siciliae
StrainC2J

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina siciliae C2J chromosome, complete genome.

Gene Summary

Adenine Count

1549314 bp

Thymine Count

1566246 bp

Guanine Count

1162129 bp

Cytosine Count

1150201 bp

Genome Length

5427890 bp

Protein-coding Genes

4682 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf169 domain-containing proteinMSSAC_RS00410Not AvailableNegative89343 - 9002025069.1
o-phosphoserine--trna ligaseMSSAC_RS00415Q8TUH7Negative90055 - 9167460681.7
haloacid dehalogenaseMSSAC_RS00420Q57639Negative92055 - 9268723869.6
hypothetical proteinMSSAC_RS25040Not AvailableNegative93311 - 934666146.66
upf0147 family proteinMSSAC_RS00425Q8TUH5Negative93459 - 9373110079.8
sjogren's syndrome/scleroderma autoantigen 1 family proteinMSSAC_RS00430Not AvailablePositive93978 - 9467326176.0
hypothetical proteinMSSAC_RS00435Not AvailableNegative95245 - 954668349.32
hypothetical proteinMSSAC_RS00440Not AvailablePositive95542 - 957247191.28
dead/deah box helicaseMSSAC_RS00445Q58900Negative96038 - 9853392633.1
glycine--trna ligaseMSSAC_RS00450A0B5U4Negative98828 - 10066968989.5

Displaying genes 81 – 90 of 4745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.