Methanosarcina thermophila TM-1

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina thermophila TM-1 is a thermophilic archaeon that thrives in the sediment of hot springs. This organism is characterized by its cocci-shaped morphology and the presence of flagella, which may facilitate movement in its hot spring habitat. M. thermophila TM-1 possesses a single replicon, indicating a streamlined genomic organization that is typical among certain archaeal species. The accession number for this strain is NZ_CP009501.1, which provides a reference for further genomic studies and characterization. The ecological role of Methanosarcina thermophila TM-1 in its native habitat likely includes the anaerobic degradation of organic matter and the production of methane, contributing to the biogeochemical cycling of carbon in hot spring environments. As a methanogen, it plays a crucial part in the anaerobic food web, potentially influencing the microbial community structure and nutrient availability in these extreme ecosystems. The adaptations of M. thermophila TM-1 to high temperatures underscore the organism's significance in understanding extremophilic life forms and their potential applications in biotechnology and bioenergy.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina thermophila
StrainTM-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring sediment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina thermophila TM-1


Gene Summary

Adenine Count

920077 bp

Thymine Count

920384 bp

Guanine Count

644368 bp

Cytosine Count

642548 bp

Genome Length

3127379 bp

Protein-coding Genes

2743 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator filr1 domain-containing proteinMSTHT_RS14665Not AvailablePositive36 - 31410725.2
hypothetical proteinMSTHT_RS00015Not AvailablePositive423 - 71311444.4
formaldehyde-activating enzymeMSTHT_RS00020Not AvailablePositive1110 - 159217005.5
duf1699 family proteinMSTHT_RS00025Not AvailablePositive2126 - 253315693.1
is5 family transposaseMSTHT_RS00030Not AvailablePositive2977 - 389736210.6
hypothetical proteinMSTHT_RS00035Not AvailablePositive3909 - 516547813.7
hypothetical proteinMSTHT_RS14180Not AvailablePositive5431 - 577512981.5
hypothetical proteinMSTHT_RS00040Not AvailablePositive5916 - 61588963.71
hypothetical proteinMSTHT_RS00045Not AvailablePositive6539 - 682911617.8
helix-turn-helix transcriptional regulatorMSTHT_RS00050Not AvailablePositive7162 - 799232071.4

Displaying genes 1 – 10 of 2809 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003419trimethylamineC3H9NChemical structure of trimethylamine75-50-3
Average59.1103Da
Monoisotopic59.07349929Da
BASm0003438coenzyme M-coenzyme B heterodisulfideC13H22NO10PS3Chemical structure of coenzyme M-coenzyme B heterodisulfideNot available
Average479.47Da
Monoisotopic479.0165408Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0034747cobalt(+)CoChemical structure of cobalt(+)NULL
Average58.9332Da
Monoisotopic58.933200194Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.