Methanosarcina thermophila TM-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina thermophila
StrainTM-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring sediment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina thermophila TM-1


Gene Summary

Adenine Count

920077 bp

Thymine Count

920384 bp

Guanine Count

644368 bp

Cytosine Count

642548 bp

Genome Length

3127379 bp

Protein-coding Genes

2743 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcriptional regulator filr1 domain-containing proteinMSTHT_RS14665Not Available+36 - 31410725.2
hypothetical proteinMSTHT_RS00015Not Available+423 - 71311444.4
formaldehyde-activating enzymeMSTHT_RS00020Not Available+1110 - 159217005.5
duf1699 family proteinMSTHT_RS00025Not Available+2126 - 253315693.1
is5 family transposaseMSTHT_RS00030Not Available+2977 - 389736210.6
hypothetical proteinMSTHT_RS00035Not Available+3909 - 516547813.7
hypothetical proteinMSTHT_RS14180Not Available+5431 - 577512981.5
hypothetical proteinMSTHT_RS00040Not Available+5916 - 61588963.71
hypothetical proteinMSTHT_RS00045Not Available+6539 - 682911617.8
helix-turn-helix transcriptional regulatorMSTHT_RS00050Not Available+7162 - 799232071.4

Displaying genes 1 – 10 of 2809 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003419trimethylamineC3H9NChemical structure of trimethylamine75-50-3
Average59.1103Da
Monoisotopic59.07349929Da
BASm0003438coenzyme M-coenzyme B heterodisulfideC13H22NO10PS3Chemical structure of coenzyme M-coenzyme B heterodisulfideNot available
Average479.47Da
Monoisotopic479.0165408Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0034747cobalt(+)CoChemical structure of cobalt(+)NULL
Average58.9332Da
Monoisotopic58.933200194Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–6 of 6 metabolites