Sphingopyxis fribergensis strain Kp5.2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis fribergensis strain Kp5.2 is characterized as a rod-shaped bacterium, which is a notable morphological trait. This strain possesses two replicons, indicating a certain level of genetic complexity and adaptability. The strain is documented under the accessions NZ_CP009122.1 and NZ_CP009123.1, which provide a basis for its genetic and genomic information. The rod shape of Sphingopyxis fribergensis strain Kp5.2 suggests that it may exhibit specific advantages in terms of motility and surface interactions in its environment. Rod-shaped bacteria are often associated with enhanced nutrient uptake and can efficiently colonize various surfaces, which may be relevant for their ecological role. The presence of two replicons in this strain could imply a distinct ecological adaptation or metabolic flexibility, allowing it to thrive in diverse environments. This trait may also facilitate horizontal gene transfer, contributing to genetic diversity and adaptability in response to environmental pressures. Overall, Sphingopyxis fribergensis strain Kp5.2's rod shape and genetic structure may play a critical role in its ecological interactions and survival strategies, highlighting the importance of morphological and genetic traits in understanding the behavior and environmental adaptability of bacterial species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis fribergensis
Strainstrain Kp5.2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKuwaiti soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis fribergensis strain Kp5.2 chromosome, complete

Gene Summary

Adenine Count

903198 bp

Thymine Count

901834 bp

Guanine Count

1585793 bp

Cytosine Count

1602759 bp

Genome Length

4993584 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formyltetrahydrofolate deformylaseSKP52_RS16215Not AvailableNegative3493078 - 349397132646.9
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseSKP52_RS16220Not AvailableNegative3494089 - 349520139400.5
l-serine ammonia-lyaseSKP52_RS16225Not AvailableNegative3495727 - 349710648377.9
superoxide dismutaseSKP52_RS16230Not AvailableNegative3497276 - 349789022557.3
cisplatin damage response atp-dependent dna ligaseSKP52_RS16235Not AvailableNegative3498076 - 349964457949.0
ligase-associated dna damage response exonucleaseSKP52_RS16240Not AvailableNegative3499641 - 350065437388.6
udgx family uracil-dna binding proteinSKP52_RS16245Not AvailableNegative3500654 - 350206952935.2
putative dna modification/repair radical sam proteinSKP52_RS16250Not AvailableNegative3502078 - 350332845763.5
sensor histidine kinaseSKP52_RS16255Not AvailableNegative3503403 - 350492056513.8
response regulatorSKP52_RS16260Not AvailablePositive3505129 - 350592328623.9

Displaying genes 3321 – 3330 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.