Escherichia coli NCCP15648

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli NCCP15648 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain typically resides in host-associated habitats, indicating a close relationship with host organisms. E. coli NCCP15648 is motile, possessing flagella that facilitate its movement. The optimal growth temperature for this strain is 37°C, which is characteristic of mesophilic organisms that prefer moderate temperature ranges. E. coli NCCP15648 contains a single replicon and is surrounded by two membranes, a structure typical of Gram-negative bacteria. In terms of its ecological role, E. coli NCCP15648 is classified as free-living, suggesting it may have the potential to exist independently in various environments, possibly interacting with different hosts or microbial communities. This trait highlights the bacterium's versatility and adaptability, which can be significant in both ecological and clinical contexts. Understanding the characteristics of E. coli NCCP15648 can provide insights into its behavior in natural ecosystems and its implications in health and disease. Its ability to adapt to different oxygen conditions and its motility may influence its interactions with other microorganisms and its role in the microbiome of hosts. The accession number for further reference is NZ_CP009050.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNCCP15648

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli NCCP15648
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli NCCP15648 chromosome, complete genome.

Gene Summary

Adenine Count

1315061 bp

Thymine Count

1313743 bp

Guanine Count

1346306 bp

Cytosine Count

1354495 bp

Genome Length

5329605 bp

Protein-coding Genes

4591 genes

Non-Coding Genes

722 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s12 methylthiotransferase rimoA610_RS04730Not AvailableNegative930444 - 93176949584.6
biofilm formation regulator bssrA610_RS04735Not AvailablePositive931982 - 93236514536.6
aldose sugar dehydrogenase yliiA610_RS04740Not AvailablePositive932476 - 93359141070.8
glutathione s-transferase gstbA610_RS04745Not AvailableNegative933588 - 93421423714.4
serine-type d-ala-d-ala carboxypeptidaseA610_RS04750Not AvailablePositive934461 - 93566343643.4
dna-binding transcriptional repressor deorA610_RS04755Not AvailableNegative935710 - 93646828576.6
undecaprenyl-diphosphate phosphataseA610_RS04760Not AvailableNegative936526 - 93712222419.9
multidrug efflux mfs transporter mdfaA610_RS04765Not AvailablePositive937407 - 93863944306.6
protein ybjhA610_RS04770Not AvailableNegative938680 - 9389649971.24
5-amino-6-(5-phospho-d-ribitylamino)uracil phosphataseA610_RS04775Not AvailableNegative939050 - 93986530238.0

Displaying genes 1531 – 1540 of 5313 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.