Dyella japonica A8

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella japonica A8 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is indicative of its genetic structure and replication capabilities. The strain is cataloged under the accession number NZ_CP008884.1, signifying its inclusion in genetic databases for further reference and study. As a member of the Dyella genus, D. japonica A8 contributes to the diverse ecological roles that such bacteria play in various environments. Gram-negative bacteria are often involved in nutrient cycling and can be significant in soil and aquatic ecosystems. Their cell wall structure, which includes an outer membrane, can also influence their interactions with other microorganisms and their resistance to certain antibiotics. The ecological implications of D. japonica A8 may include participation in the degradation of organic materials and potential roles in biogeochemical processes. Understanding the traits and genetic makeup of this bacterium can provide insights into its ecological functions and interactions within its habitat. This knowledge is crucial for appreciating the role of microbial diversity in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella japonica
StrainA8

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella japonica A8 chromosome, complete genome.

Gene Summary

Adenine Count

845241 bp

Thymine Count

847252 bp

Guanine Count

1569669 bp

Cytosine Count

1569021 bp

Genome Length

4831185 bp

Protein-coding Genes

4115 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimeraseHY57_RS17175Not AvailableNegative4079960 - 408144451497.7
trna epoxyqueuosine(34) reductase quegHY57_RS17180Not AvailablePositive4081504 - 408257439831.4
glucose-6-phosphate isomeraseHY57_RS17185Not AvailableNegative4082680 - 408432359125.7
aspartate 1-decarboxylaseHY57_RS17190Not AvailableNegative4084437 - 408482314032.7
pantoate--beta-alanine ligaseHY57_RS20985Not AvailableNegative4084924 - 408576930772.1
3-methyl-2-oxobutanoate hydroxymethyltransferaseHY57_RS17205Not AvailableNegative4085790 - 408662029078.5
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseHY57_RS17210Not AvailableNegative4086677 - 408715917271.0
polynucleotide adenylyltransferase pcnbHY57_RS17215Not AvailableNegative4087156 - 408851450604.0
Trna-gluNot AvailableNot AvailablePositive4088700 - 4088775Not Available
ferredoxin fdxaHY57_RS17225Not AvailablePositive4088826 - 408914911878.0

Displaying genes 3481 – 3490 of 4170 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.