Pseudomonas putida strain DLL-E4

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DLL-E4 is a Gram-negative, rod-shaped bacterium primarily found in soil and wastewater environments. It is classified as a heterotroph, relying on organic compounds for energy. This strain exhibits a facultative oxygen requirement, allowing it to thrive in both aerobic and anaerobic conditions. DLL-E4 possesses mobility, facilitated by the presence of flagella, and it typically exists as single cells. With a mesophilic temperature range, Pseudomonas putida strain DLL-E4 can adapt to moderate temperature fluctuations common in its natural habitats. It has a simple genetic structure characterized by a single replicon and is bounded by two membranes, typical of Gram-negative bacteria. Strain DLL-E4 does not produce spores, which is consistent with its ecological niche. The strain has demonstrated various interactions with a wide range of hosts, including plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as other organisms like Chlamydomonas reinhardtii and Struthio camelus. However, it is noteworthy that Pseudomonas putida strain DLL-E4 is also associated with nosocomial infections in humans, indicating its potential pathogenicity in animal hosts. The ecological significance of this strain lies in its ability to thrive in diverse environments while engaging in complex interactions with both flora and fauna. Its role as a free-living bacterium in soil and wastewater systems may contribute to nutrient cycling and the health of these ecosystems, highlighting its importance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain DLL-E4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain DLL-E4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DLL-E4 chromosome, complete genome.

Gene Summary

Adenine Count

1216533 bp

Thymine Count

1217334 bp

Guanine Count

2024861 bp

Cytosine Count

2025334 bp

Genome Length

6484062 bp

Protein-coding Genes

5770 genes

Non-Coding Genes

313 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is66-like element accessory protein tnpaDW66_RS29435Not AvailableNegative6408015 - 640833511567.0
hypothetical proteinDW66_RS32630Not AvailableNegative6408979 - 640998038441.4
hypothetical proteinDW66_RS32635Not AvailableNegative6409986 - 641067225474.8
tnib family ntp-binding proteinDW66_RS29935Not AvailableNegative6410676 - 641156933822.9
mu transposase c-terminal domain-containing proteinDW66_RS31210Not AvailableNegative6411656 - 641351271360.3
alternative ribosome rescue aminoacyl-trna hydrolase arfbDW66_RS29460Not AvailableNegative6414324 - 641473415155.3
hypothetical proteinDW66_RS29465Not AvailableNegative6414812 - 641523415743.1
lysr family transcriptional regulatorDW66_RS29470Not AvailablePositive6415451 - 641637733276.2
rid family hydrolaseDW66_RS29475Not AvailableNegative6416398 - 641685916745.8
tn3 family transposaseDW66_RS29480Not AvailablePositive6417172 - 6420189115120.0

Displaying genes 6001 – 6010 of 6083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total