Pseudomonas putida strain DLL-E4

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DLL-E4 is a Gram-negative, rod-shaped bacterium primarily found in soil and wastewater environments. It is classified as a heterotroph, relying on organic compounds for energy. This strain exhibits a facultative oxygen requirement, allowing it to thrive in both aerobic and anaerobic conditions. DLL-E4 possesses mobility, facilitated by the presence of flagella, and it typically exists as single cells. With a mesophilic temperature range, Pseudomonas putida strain DLL-E4 can adapt to moderate temperature fluctuations common in its natural habitats. It has a simple genetic structure characterized by a single replicon and is bounded by two membranes, typical of Gram-negative bacteria. Strain DLL-E4 does not produce spores, which is consistent with its ecological niche. The strain has demonstrated various interactions with a wide range of hosts, including plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as other organisms like Chlamydomonas reinhardtii and Struthio camelus. However, it is noteworthy that Pseudomonas putida strain DLL-E4 is also associated with nosocomial infections in humans, indicating its potential pathogenicity in animal hosts. The ecological significance of this strain lies in its ability to thrive in diverse environments while engaging in complex interactions with both flora and fauna. Its role as a free-living bacterium in soil and wastewater systems may contribute to nutrient cycling and the health of these ecosystems, highlighting its importance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain DLL-E4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain DLL-E4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DLL-E4 chromosome, complete genome.

Gene Summary

Adenine Count

1216533 bp

Thymine Count

1217334 bp

Guanine Count

2024861 bp

Cytosine Count

2025334 bp

Genome Length

6484062 bp

Protein-coding Genes

5770 genes

Non-Coding Genes

313 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-n-acetylmuramoyl-pentapeptide- transferaseDW66_RS23885Not AvailableNegative5223149 - 522423139369.4
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseDW66_RS23890Not AvailableNegative5224231 - 522559846834.9
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseDW66_RS23895Not AvailableNegative5225591 - 522707853523.0
penicillin-binding protein 2DW66_RS23900Not AvailableNegative5227078 - 522882063169.5
cell division protein ftslDW66_RS23905Not AvailableNegative5228820 - 522911310875.3
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhDW66_RS23910Not AvailableNegative5229110 - 523005134180.0
division/cell wall cluster transcriptional repressor mrazDW66_RS23915Not AvailableNegative5230054 - 523050917035.6
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive5230818 - 5231177Not Available
16s rrna (cytidine(1402)-2'-o)-methyltransferaseDW66_RS23920Not AvailableNegative5231245 - 523212031073.5
penicillin-binding protein activatorDW66_RS23925Not AvailablePositive5232307 - 523412464748.2

Displaying genes 4991 – 5000 of 6083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total