Stenotrophomonas rhizophila strain DSM 14405

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas rhizophila strain DSM 14405 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. It is an anaerobic organism, thriving in environments without oxygen. Stenotrophomonas rhizophila is mesophilic, which means it prefers moderate temperature ranges for growth. The strain has a singular replicon, suggesting a simpler genomic structure compared to other more complex bacteria. Notably, it is nonsporulating, meaning it does not form spores as a means of survival under unfavorable conditions. The diverse habitat of Stenotrophomonas rhizophila indicates its adaptability to various environmental conditions, although specifics about these habitats are not provided. This adaptability can facilitate its role in different ecological contexts, potentially contributing to nutrient cycling or interactions with plant roots, given its identification as a rhizophilic organism. In summary, Stenotrophomonas rhizophila strain DSM 14405 demonstrates unique traits relevant to its ecological roles, particularly its anaerobic metabolism and flexibility in diverse habitats. These characteristics may enable it to play significant roles in soil microbiomes and plant health, although further research would be required to elucidate its specific ecological contributions. The accession number for this strain is NZ_CP007597.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas rhizophila
Strainstrain DSM 14405

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Stenotrophomonas rhizophila strain DSM 14405
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Stenotrophomonas rhizophila strain DSM 14405 chromosome.

Gene Summary

Adenine Count

760950 bp

Thymine Count

758401 bp

Guanine Count

1564874 bp

Cytosine Count

1562203 bp

Genome Length

4648976 bp

Protein-coding Genes

4014 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseDX03_RS16550Not AvailableNegative3776523 - 377801051294.4
peptidoglycan d,d-transpeptidase ftsi family proteinDX03_RS16555Not AvailableNegative3778007 - 377985165912.0
cell division protein ftslDX03_RS16560Not AvailableNegative3779848 - 37801119901.32
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhDX03_RS16565Not AvailableNegative3780108 - 378107635242.1
division/cell wall cluster transcriptional repressor mrazDX03_RS16570Not AvailableNegative3781091 - 378153716422.7
nrde family proteinDX03_RS16575Not AvailablePositive3781863 - 378263927173.1
dm13 domain-containing proteinDX03_RS16580Not AvailablePositive3782877 - 378335617645.2
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive3783401 - 3783751Not Available
16s rrna (cytidine(1402)-2'-o)-methyltransferaseDX03_RS16585Not AvailableNegative3784180 - 378500128933.6
penicillin-binding protein activatorDX03_RS16590Not AvailablePositive3785082 - 378680359298.7

Displaying genes 3341 – 3350 of 4094 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.