Stenotrophomonas rhizophila strain DSM 14405

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas rhizophila strain DSM 14405 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. It is an anaerobic organism, thriving in environments without oxygen. Stenotrophomonas rhizophila is mesophilic, which means it prefers moderate temperature ranges for growth. The strain has a singular replicon, suggesting a simpler genomic structure compared to other more complex bacteria. Notably, it is nonsporulating, meaning it does not form spores as a means of survival under unfavorable conditions. The diverse habitat of Stenotrophomonas rhizophila indicates its adaptability to various environmental conditions, although specifics about these habitats are not provided. This adaptability can facilitate its role in different ecological contexts, potentially contributing to nutrient cycling or interactions with plant roots, given its identification as a rhizophilic organism. In summary, Stenotrophomonas rhizophila strain DSM 14405 demonstrates unique traits relevant to its ecological roles, particularly its anaerobic metabolism and flexibility in diverse habitats. These characteristics may enable it to play significant roles in soil microbiomes and plant health, although further research would be required to elucidate its specific ecological contributions. The accession number for this strain is NZ_CP007597.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas rhizophila
Strainstrain DSM 14405

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Stenotrophomonas rhizophila strain DSM 14405
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Stenotrophomonas rhizophila strain DSM 14405 chromosome.

Gene Summary

Adenine Count

760950 bp

Thymine Count

758401 bp

Guanine Count

1564874 bp

Cytosine Count

1562203 bp

Genome Length

4648976 bp

Protein-coding Genes

4014 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malonate decarboxylase subunit alphaDX03_RS14245Not AvailablePositive3296381 - 329802459893.7
malonate decarboxylase acyl carrier proteinDX03_RS14250Not AvailablePositive3298036 - 329835611086.3
biotin-independent malonate decarboxylase subunit betaDX03_RS14255Not AvailablePositive3298353 - 329926131778.2
biotin-independent malonate decarboxylase subunit gammaDX03_RS14260Not AvailablePositive3299264 - 329996824488.5
malonate decarboxylase holo-[acyl-carrier-protein] synthaseDX03_RS14265Not AvailablePositive3299961 - 330061123889.7
triphosphoribosyl-dephospho-coa synthase mdcbDX03_RS14270Not AvailablePositive3300608 - 330146529968.3
malonate decarboxylase subunit epsilonDX03_RS14275Not AvailablePositive3301462 - 330238231862.5
slc13 family permeaseDX03_RS14280Not AvailablePositive3302469 - 330383646355.0
gntr family transcriptional regulatorDX03_RS14285Not AvailablePositive3303929 - 330464826703.1
mfs transporterDX03_RS14290Not AvailableNegative3304886 - 330612442851.1

Displaying genes 2881 – 2890 of 4094 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.