Stenotrophomonas rhizophila strain DSM 14405

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas rhizophila strain DSM 14405 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. It is an anaerobic organism, thriving in environments without oxygen. Stenotrophomonas rhizophila is mesophilic, which means it prefers moderate temperature ranges for growth. The strain has a singular replicon, suggesting a simpler genomic structure compared to other more complex bacteria. Notably, it is nonsporulating, meaning it does not form spores as a means of survival under unfavorable conditions. The diverse habitat of Stenotrophomonas rhizophila indicates its adaptability to various environmental conditions, although specifics about these habitats are not provided. This adaptability can facilitate its role in different ecological contexts, potentially contributing to nutrient cycling or interactions with plant roots, given its identification as a rhizophilic organism. In summary, Stenotrophomonas rhizophila strain DSM 14405 demonstrates unique traits relevant to its ecological roles, particularly its anaerobic metabolism and flexibility in diverse habitats. These characteristics may enable it to play significant roles in soil microbiomes and plant health, although further research would be required to elucidate its specific ecological contributions. The accession number for this strain is NZ_CP007597.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas rhizophila
Strainstrain DSM 14405

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Stenotrophomonas rhizophila strain DSM 14405
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Stenotrophomonas rhizophila strain DSM 14405 chromosome.

Gene Summary

Adenine Count

760950 bp

Thymine Count

758401 bp

Guanine Count

1564874 bp

Cytosine Count

1562203 bp

Genome Length

4648976 bp

Protein-coding Genes

4014 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen decarboxylaseDX03_RS05130Not AvailableNegative1227913 - 122898638795.8
wgr domain-containing proteinDX03_RS05135Not AvailableNegative1229050 - 12293019451.24
3-dehydroquinate synthaseDX03_RS05140Not AvailableNegative1229374 - 123048338477.8
shikimate kinaseDX03_RS05145Not AvailableNegative1230480 - 123102219767.8
dodecin family proteinDX03_RS05150Not AvailablePositive1231118 - 12313217247.7
kinaseDX03_RS05155Not AvailableNegative1231367 - 123219730771.7
pyridoxamine 5'-phosphate oxidaseDX03_RS05160Not AvailablePositive1232239 - 123283822729.6
doxx family proteinDX03_RS05165Not AvailablePositive1232937 - 123339816064.1
ankyrin repeat domain-containing proteinDX03_RS05170Not AvailablePositive1233474 - 123431028419.7
propionate catabolism operon regulatory protein prprDX03_RS05175Not AvailableNegative1234320 - 123593958942.9

Displaying genes 1051 – 1060 of 4094 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.