Gemmatirosa kalamazoonensis strain KBS708 extrachromosomal.

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatirosa

Description

Gemmatirosa kalamazoonensis strain KBS708 is characterized by the presence of a single extrachromosomal replicon. This trait indicates that the strain possesses one distinct piece of genetic material outside its chromosomal DNA, which can be significant for various biological functions, including plasmid-associated traits such as antibiotic resistance or horizontal gene transfer. The strain is cataloged under the accession number NZ_CP007127.1, providing a reference for its genetic information and enabling further research into its genomic structure and potential applications. The single replicon suggests a streamlined genomic organization, which might influence its adaptability and survival in various environments. From an ecological perspective, the existence of a singular extrachromosomal element may reflect the organism's evolutionary strategies, allowing it to efficiently manage its genetic resources. This could be advantageous in fluctuating habitats, where rapid responses to environmental changes are crucial. The genetic configuration of Gemmatirosa kalamazoonensis strain KBS708, with its unique replicon, may play a role in its interactions with other microorganisms and its overall ecological niche. Understanding these traits is essential for further studies on the ecological impact and potential biotechnological applications of this strain.

Taxonomy

KingdomPseudomonadati
PhylumGemmatimonadota
ClassGemmatimonadia
OrderGemmatimonadales
FamilyGemmatimonadaceae
GenusGemmatirosa
SpeciesGemmatirosa kalamazoonensis
Strainstrain KBS708 extrachromosomal.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmatirosa kalamazoonensis strain KBS708 extrachromosomal.


Gene Summary

Adenine Count

2804 bp

Thymine Count

3059 bp

Guanine Count

7580 bp

Cytosine Count

7509 bp

Genome Length

20952 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integrase arm-type dna-binding domain-containing proteinJ421_RS00060Not AvailableNegative4386 - 579550991.5
hypothetical proteinJ421_RS00065Not AvailableNegative6006 - 62097333.72
hypothetical proteinJ421_RS00070Not AvailableNegative6323 - 9397106548.0
hypothetical proteinJ421_RS00075Not AvailableNegative9409 - 1004721841.7
hypothetical proteinJ421_RS00080Not AvailableNegative10062 - 1045114091.4
luxr c-terminal-related transcriptional regulatorJ421_RS00085Not AvailableNegative10550 - 1091513490.5
hypothetical proteinJ421_RS00090Not AvailableNegative10917 - 111448328.86
hypothetical proteinJ421_RS00095Not AvailableNegative11141 - 1155715210.2
primase-helicase family proteinJ421_RS00100Not AvailableNegative11833 - 1322452085.1
hypothetical proteinJ421_RS00105Not AvailableNegative13221 - 134939855.89

Displaying genes 11 – 20 of 34 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
Metabolite IDMetabolite nameStructureCAS number
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm00041244-(gamma-L-glutamylamino)butanalC9H16N2O4Chemical structure of 4-(gamma-L-glutamylamino)butanalNot available
Average216.2343Da
Monoisotopic216.11100701Da
BASm0004386N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateC63H103NO12P2Chemical structure of N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1128.461Da
Monoisotopic1127.696649Da
BASm0004924UDP-N-acetyl-alpha-D-mannosaminouronateC17H22N3O18P2Chemical structure of UDP-N-acetyl-alpha-D-mannosaminouronateNot available
Average618.3134Da
Monoisotopic618.037358939Da

Displaying 1–10 of 10 metabolites

Health Effects

No health effects information available for this bacterium.