Pseudomonas cichorii JBC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cichorii JBC1 is a Gram-negative bacterium, characterized by its single replicon structure, which is indicated by the presence of one circular chromosome. This organism has been sequenced, and its genomic data can be accessed under the accession number NZ_CP007039.1. The classification of Pseudomonas cichorii within the Pseudomonas genus suggests that it may exhibit traits common to this group, such as versatility in metabolic pathways and resilience in various environments. Gram-negative bacteria, like Pseudomonas cichorii, are typically known for their distinctive cell wall structure, which includes an outer membrane that contributes to their ability to resist certain antibiotics and environmental stresses. Pseudomonas cichorii has ecological significance, particularly in agricultural contexts, as it is known to be associated with various plant hosts. This bacterium has been implicated in diseases affecting crops, which underscores the importance of understanding its biology and ecology for disease management strategies. The single replicon characteristic may influence its genetic stability and adaptability, further enabling it to thrive in different ecological niches, especially in soil and plant environments. In summary, Pseudomonas cichorii JBC1 is a Gram-negative bacterium with a single replicon, with potential implications for plant health and agricultural productivity, highlighting the need for ongoing research into its interactions with host plants and its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cichorii
StrainJBC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cichorii JBC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cichorii JBC1 chromosome, complete genome.

Gene Summary

Adenine Count

1254436 bp

Thymine Count

1253501 bp

Guanine Count

1737636 bp

Cytosine Count

1740439 bp

Genome Length

5986012 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mate family efflux transporterBH81_RS23165Not AvailablePositive5400811 - 540215148194.0
contractile injection system protein, vgrg/pvc8 familyBH81_RS23170Not AvailableNegative5402145 - 540354552703.7
arginine decarboxylaseBH81_RS23175Not AvailableNegative5403723 - 540563671278.6
translation initiation factor sui1BH81_RS23180Not AvailableNegative5405725 - 540609612788.6
nudix hydrolaseBH81_RS23185Not AvailableNegative5406272 - 540681719815.3
duf2333 family proteinBH81_RS23190Not AvailableNegative5406817 - 540789639930.5
pled family two-component system response regulatorBH81_RS23195Not AvailablePositive5408197 - 540986162951.3
protein-disulfide reductase dsbdBH81_RS23200Not AvailablePositive5409962 - 541172263048.7
type ii 3-dehydroquinate dehydrataseBH81_RS23205Not AvailablePositive5411851 - 541230316409.7
acetyl-coa carboxylase biotin carboxyl carrier proteinBH81_RS23210Not AvailablePositive5412383 - 541283516031.4

Displaying genes 4661 – 4670 of 5177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.