Pseudomonas cichorii JBC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cichorii JBC1 is a Gram-negative bacterium, characterized by its single replicon structure, which is indicated by the presence of one circular chromosome. This organism has been sequenced, and its genomic data can be accessed under the accession number NZ_CP007039.1. The classification of Pseudomonas cichorii within the Pseudomonas genus suggests that it may exhibit traits common to this group, such as versatility in metabolic pathways and resilience in various environments. Gram-negative bacteria, like Pseudomonas cichorii, are typically known for their distinctive cell wall structure, which includes an outer membrane that contributes to their ability to resist certain antibiotics and environmental stresses. Pseudomonas cichorii has ecological significance, particularly in agricultural contexts, as it is known to be associated with various plant hosts. This bacterium has been implicated in diseases affecting crops, which underscores the importance of understanding its biology and ecology for disease management strategies. The single replicon characteristic may influence its genetic stability and adaptability, further enabling it to thrive in different ecological niches, especially in soil and plant environments. In summary, Pseudomonas cichorii JBC1 is a Gram-negative bacterium with a single replicon, with potential implications for plant health and agricultural productivity, highlighting the need for ongoing research into its interactions with host plants and its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cichorii
StrainJBC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cichorii JBC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cichorii JBC1 chromosome, complete genome.

Gene Summary

Adenine Count

1254436 bp

Thymine Count

1253501 bp

Guanine Count

1737636 bp

Cytosine Count

1740439 bp

Genome Length

5986012 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3396 domain-containing proteinBH81_RS20405Not AvailableNegative4800902 - 480203242391.6
tetr family transcriptional regulatorBH81_RS20410Not AvailableNegative4802502 - 480313423919.8
efflux rnd transporter periplasmic adaptor subunitBH81_RS20415Not AvailablePositive4803371 - 480453140895.8
efflux rnd transporter permease subunitBH81_RS20420Not AvailablePositive4804535 - 4807669112337.0
adec/adek/oprm family multidrug efflux complex outer membrane factorBH81_RS20425Not AvailablePositive4807666 - 480912653445.8
mfs family transporterBH81_RS20430Not AvailableNegative4809185 - 481048947478.4
3-oxoadipyl-coa thiolaseBH81_RS20435Not AvailableNegative4810618 - 481182941961.6
coa-transferase subunit betaBH81_RS20440Not AvailableNegative4811826 - 481260827320.7
coa transferase subunit aBH81_RS20445Not AvailableNegative4812605 - 481346230831.9
pca regulon transcriptional regulator pcarBH81_RS20450Not AvailableNegative4813614 - 481445630891.4

Displaying genes 4131 – 4140 of 5177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.