Pseudomonas cichorii JBC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cichorii JBC1 is a Gram-negative bacterium, characterized by its single replicon structure, which is indicated by the presence of one circular chromosome. This organism has been sequenced, and its genomic data can be accessed under the accession number NZ_CP007039.1. The classification of Pseudomonas cichorii within the Pseudomonas genus suggests that it may exhibit traits common to this group, such as versatility in metabolic pathways and resilience in various environments. Gram-negative bacteria, like Pseudomonas cichorii, are typically known for their distinctive cell wall structure, which includes an outer membrane that contributes to their ability to resist certain antibiotics and environmental stresses. Pseudomonas cichorii has ecological significance, particularly in agricultural contexts, as it is known to be associated with various plant hosts. This bacterium has been implicated in diseases affecting crops, which underscores the importance of understanding its biology and ecology for disease management strategies. The single replicon characteristic may influence its genetic stability and adaptability, further enabling it to thrive in different ecological niches, especially in soil and plant environments. In summary, Pseudomonas cichorii JBC1 is a Gram-negative bacterium with a single replicon, with potential implications for plant health and agricultural productivity, highlighting the need for ongoing research into its interactions with host plants and its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cichorii
StrainJBC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cichorii JBC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cichorii JBC1 chromosome, complete genome.

Gene Summary

Adenine Count

1254436 bp

Thymine Count

1253501 bp

Guanine Count

1737636 bp

Cytosine Count

1740439 bp

Genome Length

5986012 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isovaleryl-coa dehydrogenaseBH81_RS12295Not AvailableNegative2794450 - 279561342395.7
hypothetical proteinBH81_RS27430Not AvailablePositive2795798 - 27960348648.89
hydroxymethylglutaryl-coa lyaseBH81_RS12305Not AvailableNegative2796319 - 279721831609.2
merr family dna-binding transcriptional regulatorBH81_RS12310Not AvailableNegative2797269 - 279764914791.8
lysr family transcriptional regulatorBH81_RS12315Not AvailableNegative2797804 - 279873334977.4
acyl-coa dehydrogenaseBH81_RS12320Not AvailablePositive2798902 - 280011344661.1
substrate-binding domain-containing proteinBH81_RS12325Not AvailableNegative2800133 - 280147648513.9
exodeoxyribonuclease iiiBH81_RS12330Not AvailableNegative2801616 - 280242830931.6
autotransporter assembly complex family proteinBH81_RS12340Not AvailablePositive2802755 - 280444361737.9
translocation/assembly module tamb domain-containing proteinBH81_RS12345Not AvailablePositive2804449 - 2808129131803.0

Displaying genes 2561 – 2570 of 5177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.