Pseudomonas cichorii JBC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cichorii JBC1 is a Gram-negative bacterium, characterized by its single replicon structure, which is indicated by the presence of one circular chromosome. This organism has been sequenced, and its genomic data can be accessed under the accession number NZ_CP007039.1. The classification of Pseudomonas cichorii within the Pseudomonas genus suggests that it may exhibit traits common to this group, such as versatility in metabolic pathways and resilience in various environments. Gram-negative bacteria, like Pseudomonas cichorii, are typically known for their distinctive cell wall structure, which includes an outer membrane that contributes to their ability to resist certain antibiotics and environmental stresses. Pseudomonas cichorii has ecological significance, particularly in agricultural contexts, as it is known to be associated with various plant hosts. This bacterium has been implicated in diseases affecting crops, which underscores the importance of understanding its biology and ecology for disease management strategies. The single replicon characteristic may influence its genetic stability and adaptability, further enabling it to thrive in different ecological niches, especially in soil and plant environments. In summary, Pseudomonas cichorii JBC1 is a Gram-negative bacterium with a single replicon, with potential implications for plant health and agricultural productivity, highlighting the need for ongoing research into its interactions with host plants and its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cichorii
StrainJBC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cichorii JBC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cichorii JBC1 chromosome, complete genome.

Gene Summary

Adenine Count

1254436 bp

Thymine Count

1253501 bp

Guanine Count

1737636 bp

Cytosine Count

1740439 bp

Genome Length

5986012 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitBH81_RS10550Not AvailableNegative2378881 - 237944120518.3
hypothetical proteinBH81_RS10555Not AvailablePositive2379634 - 238010417859.6
type vi secretion system baseplate subunit tsskBH81_RS10560Not AvailablePositive2380156 - 238149048232.1
dotu family type iv/vi secretion system proteinBH81_RS10565Not AvailablePositive2381509 - 238227929061.9
type vi secretion protein icmf/tssm n-terminal domain-containing proteinBH81_RS10570Not AvailablePositive2382276 - 2386091142498.0
type vi secretion system protein tssaBH81_RS10575Not AvailablePositive2386088 - 238716140535.1
dna/rna non-specific endonucleaseBH81_RS10580Not AvailableNegative2387299 - 238838740392.1
lysr substrate-binding domain-containing proteinBH81_RS10585Not AvailableNegative2388488 - 238940533939.8
sdr family nad(p)-dependent oxidoreductaseBH81_RS10590Not AvailablePositive2389591 - 239034025662.1
mfs transporterBH81_RS10595Not AvailablePositive2390435 - 239173947560.3

Displaying genes 2211 – 2220 of 5177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.