Bibersteinia trehalosi USDA-ARS-USMARC-188

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Bibersteinia

Description

Bibersteinia trehalosi USDA-ARS-USMARC-188 is characterized by a single replicon, which indicates a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The strain is associated with the accession NZ_CP006954.1, which provides a reference for its genomic sequence and facilitates further research into its characteristics and potential impacts. Bibersteinia trehalosi is known to be pathogenic, particularly in ruminants, where it can cause significant health issues. The single replicon may play a role in its pathogenicity, allowing for efficient replication and expression of genes that contribute to virulence. The ecological significance of Bibersteinia trehalosi lies in its interaction with host organisms and its potential role in disease dynamics within livestock populations. Understanding this pathogen's genomic traits can help in the development of management strategies to mitigate its impact on animal health and agricultural productivity. Additionally, the genetic data associated with this strain can provide insights into its evolutionary adaptations and its role in the microbiome of ruminants. This knowledge is crucial for developing effective vaccines or therapeutic interventions to control infections caused by this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusBibersteinia
SpeciesBibersteinia trehalosi
StrainUSDA-ARS-USMARC-188

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete

Gene Summary

Adenine Count

687776 bp

Thymine Count

694161 bp

Guanine Count

478227 bp

Cytosine Count

480811 bp

Genome Length

2340975 bp

Protein-coding Genes

2083 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtp 3',8-cyclase moaaF542_RS05560Not AvailablePositive1216342 - 121735838419.4
cyclic pyranopterin monophosphate synthase moacF542_RS05565Not AvailablePositive1217719 - 121819517241.0
trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmjF542_RS05570Not AvailablePositive1218195 - 121891727126.9
abc transporter substrate-binding proteinF542_RS05575Not AvailableNegative1218953 - 121991233653.5
clpxp protease specificity-enhancing factorF542_RS05580Not AvailableNegative1220083 - 122049915860.8
glutathione s-transferase n-terminal domain-containing proteinF542_RS05585Not AvailableNegative1220499 - 122114024365.2
duf496 family proteinF542_RS05590Not AvailablePositive1221356 - 122164611723.2
lytic transglycosylase domain-containing proteinF542_RS05595Not AvailableNegative1221713 - 122280440988.9
trna pseudouridine(55) synthase trubF542_RS05600Not AvailableNegative1222797 - 122373534694.1
30s ribosome-binding factor rbfaF542_RS05605Not AvailableNegative1223735 - 122413315124.2

Displaying genes 1121 – 1130 of 2163 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.