Dickeya zeae EC1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya zeae EC1 is a rod-shaped bacterium known for its pathogenic nature, particularly affecting plants. This organism possesses flagella, which facilitate motility, allowing it to navigate through its environment effectively. Genomic analysis reveals that Dickeya zeae EC1 contains a single replicon, indicating a simpler genomic organization compared to some other bacterial species that may have multiple replicons. The genomic sequence for this strain can be accessed under the accession number NZ_CP006929.1, providing a valuable resource for researchers interested in studying its genetic makeup and pathogenic mechanisms. The pathogenicity of Dickeya zeae EC1 is significant in agricultural contexts, particularly in the context of crop diseases. Its ability to cause disease can lead to substantial economic losses in affected crops, making it an important subject of study for plant pathologists and microbiologists. Understanding its characteristics, including its motility and genetic structure, can aid in developing strategies for managing its impact on agricultural systems. Overall, the presence of flagella and the unique genomic configuration of Dickeya zeae EC1 contribute to its ecological role as a plant pathogen, highlighting the importance of bacterial motility and genetic attributes in its pathogenicity and the broader implications for crop health and management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya zeae
StrainEC1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya zeae EC1 chromosome, complete genome.

Gene Summary

Adenine Count

1057268 bp

Thymine Count

1053435 bp

Guanine Count

1207216 bp

Cytosine Count

1214445 bp

Genome Length

4532364 bp

Protein-coding Genes

3754 genes

Non-Coding Genes

267 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dutp diphosphataseW909_RS00685Not AvailableNegative154603 - 15506116132.5
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcW909_RS00690Not AvailableNegative155030 - 15628644224.1
ferritin-like domain-containing proteinW909_RS00695Not AvailableNegative156439 - 15692417693.3
radc family proteinW909_RS00700Not AvailablePositive157135 - 15780024751.0
50s ribosomal protein l28W909_RS00705Not AvailablePositive158039 - 1582758965.01
50s ribosomal protein l33W909_RS00710Not AvailablePositive158287 - 1584546373.91
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseW909_RS00715Not AvailablePositive158594 - 15940330378.5
pantetheine-phosphate adenylyltransferaseW909_RS00720Not AvailableNegative159469 - 15994817703.5
glycosyltransferase family 2 proteinW909_RS00725Not AvailableNegative159938 - 16072930315.9
lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferaseW909_RS00730Not AvailableNegative160729 - 16200647975.6

Displaying genes 311 – 320 of 4021 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017332D-Ribose-5-phosphateC5H11O8PChemical structure of D-Ribose-5-phosphate4151-19-3
Average230.1098Da
Monoisotopic230.01915384Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.