Clostridium sporogenes strain PA 3679

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sporogenes strain PA 3679 is a Gram-positive, anaerobic bacterium predominantly found in diverse habitats such as the caecum, colon, dairy products, and cheese, as well as in pit mud environments. This strain thrives in oxygen-depleted conditions, reflecting its anaerobic nature. The presence of C. sporogenes in the gut suggests a role in the digestive processes of various organisms, particularly in breaking down complex organic materials. Additionally, its association with dairy products and cheese may indicate its potential contribution to fermentation processes, influencing the texture and flavor profiles of these food items. Notably, the occurrence of C. sporogenes in pit mud highlights its ecological versatility, as it can persist in varied environments, potentially playing roles in biogeochemical cycles or in the microbial community dynamics of anaerobic ecosystems. Understanding the specific metabolic pathways utilized by this strain in different habitats could provide insights into its ecological functions and contributions to nutrient cycling.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sporogenes
Strainstrain PA 3679

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Clostridium sporogenes strain PA 3679
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcaecum; cheese; colon; dairy products; gut; intestine; pit mud
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sporogenes strain PA 3679


Gene Summary

Adenine Count

5725 bp

Thymine Count

5313 bp

Guanine Count

2502 bp

Cytosine Count

1846 bp

Genome Length

15386 bp

Protein-coding Genes

20 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinVT92_RS19340Not Available+431 - 6317876.25
hypothetical proteinVT92_RS00010Not Available+621 - 8248105.56
hypothetical proteinVT92_RS00015Not Available+1284 - 280456869.8
hypothetical proteinVT92_RS00020Not Available+2797 - 323416510.7
duf3888 domain-containing proteinVT92_RS00025Not Available-3325 - 373215530.8
sigma-70 family rna polymerase sigma factorVT92_RS00030Not Available+4953 - 552822632.2
tyrosine recombinase xercVT92_RS00035Q8RA66-5549 - 651737597.9
helix-turn-helix domain-containing proteinVT92_RS00040Not Available-6563 - 67968998.1
duf1659 domain-containing proteinVT92_RS00045Not Available+6926 - 71508046.8
duf2922 domain-containing proteinVT92_RS00050Not Available+7191 - 74158331.01

Displaying genes 1 – 10 of 83 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

265 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000590phloretateC9H9O3Chemical structure of phloretateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00009123-(indol-3-yl)lactateC11H10NO3Chemical structure of 3-(indol-3-yl)lactateNot available
Average204.206Da
Monoisotopic204.0666168Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 265 metabolites