Pseudomonas chlororaphis subsp. aureofaciens 30-84

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis subsp. aureofaciens 30-84 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is essential for its genetic stability and replication. The strain has been cataloged under the accession number NZ_CM001559.1. This subspecies is notable for its potential applications in agricultural settings, particularly as a biocontrol agent against plant pathogens. Its ability to produce antimicrobial compounds may contribute to its effectiveness in suppressing diseases in crops. The presence of a single replicon indicates a streamlined genome structure, which could facilitate efficient metabolic processes and adaptation to various environmental conditions. Understanding the traits of Pseudomonas chlororaphis subsp. aureofaciens 30-84 provides insight into its ecological role. As a member of the Pseudomonas genus, it is likely involved in nutrient cycling and may play a significant part in soil health. Its interactions with other microorganisms and plants can influence ecosystem dynamics, showcasing the importance of this bacterium beyond its agricultural utility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainsubsp. aureofaciens 30-84

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis subsp. aureofaciens 30-84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas chlororaphis subsp. aureofaciens 30-84


Gene Summary

Adenine Count

1236206 bp

Thymine Count

1233212 bp

Guanine Count

2092418 bp

Cytosine Count

2103185 bp

Genome Length

6666321 bp

Protein-coding Genes

5883 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrroloquinoline quinone biosynthesis protein pqqfPCHL3084_RS27480Not AvailablePositive6219178 - 622164390080.7
pyrroloquinoline quinone precursor peptide pqqaPCHL3084_RS30305Not AvailablePositive6221800 - 62218742857.43
pyrroloquinoline quinone biosynthesis protein pqqbPCHL3084_RS27485Not AvailablePositive6221946 - 622285733148.5
pyrroloquinoline-quinone synthase pqqcPCHL3084_RS27490Not AvailablePositive6222995 - 622374728950.3
pyrroloquinoline quinone biosynthesis peptide chaperone pqqdPCHL3084_RS27495Not AvailablePositive6223744 - 622401910301.3
pyrroloquinoline quinone biosynthesis protein pqqePCHL3084_RS27500Not AvailablePositive6223991 - 622516343930.4
s9 family peptidasePCHL3084_RS27505Not AvailablePositive6225129 - 622697067759.1
yqae/pmp3 family membrane proteinPCHL3084_RS30310Not AvailableNegative6227021 - 62271795741.49
helix-turn-helix domain-containing proteinPCHL3084_RS27515Not AvailableNegative6227307 - 622762711553.0
type ii toxin-antitoxin system rele/pare family toxinPCHL3084_RS27520Not AvailableNegative6227605 - 622797614173.2

Displaying genes 5601 – 5610 of 6016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.