Pseudomonas chlororaphis subsp. aureofaciens 30-84

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis subsp. aureofaciens 30-84 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is essential for its genetic stability and replication. The strain has been cataloged under the accession number NZ_CM001559.1. This subspecies is notable for its potential applications in agricultural settings, particularly as a biocontrol agent against plant pathogens. Its ability to produce antimicrobial compounds may contribute to its effectiveness in suppressing diseases in crops. The presence of a single replicon indicates a streamlined genome structure, which could facilitate efficient metabolic processes and adaptation to various environmental conditions. Understanding the traits of Pseudomonas chlororaphis subsp. aureofaciens 30-84 provides insight into its ecological role. As a member of the Pseudomonas genus, it is likely involved in nutrient cycling and may play a significant part in soil health. Its interactions with other microorganisms and plants can influence ecosystem dynamics, showcasing the importance of this bacterium beyond its agricultural utility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainsubsp. aureofaciens 30-84

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis subsp. aureofaciens 30-84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas chlororaphis subsp. aureofaciens 30-84


Gene Summary

Adenine Count

1236206 bp

Thymine Count

1233212 bp

Guanine Count

2092418 bp

Cytosine Count

2103185 bp

Genome Length

6666321 bp

Protein-coding Genes

5883 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s21PCHL3084_RS30300Not AvailablePositive6203576 - 62037918386.25
dna primasePCHL3084_RS27435Not AvailablePositive6204261 - 620622573014.5
rna polymerase sigma factor rpodPCHL3084_RS27440Not AvailablePositive6206293 - 620814069276.7
bifunctional diguanylate cyclase/phosphodiesterasePCHL3084_RS27445Not AvailablePositive6208262 - 6212005140021.0
Trna-metNot AvailableNot AvailablePositive6212021 - 6212097Not Available
lipopolysaccharide biosynthesis proteinPCHL3084_RS27455Not AvailablePositive6212387 - 621317229081.2
glucose/quinate/shikimate family membrane-bound pqq-dependent dehydrogenasePCHL3084_RS27460Not AvailableNegative6213255 - 621563084749.4
lrp/asnc family transcriptional regulatorPCHL3084_RS27465Not AvailablePositive6215845 - 621630616760.3
flavin monoamine oxidase family proteinPCHL3084_RS27470Not AvailablePositive6216543 - 621822562356.2
carbon-nitrogen hydrolase family proteinPCHL3084_RS27475Not AvailablePositive6218335 - 621912929367.9

Displaying genes 5591 – 5600 of 6016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.