Pseudomonas chlororaphis subsp. aureofaciens 30-84

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis subsp. aureofaciens 30-84 is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is essential for its genetic stability and replication. The strain has been cataloged under the accession number NZ_CM001559.1. This subspecies is notable for its potential applications in agricultural settings, particularly as a biocontrol agent against plant pathogens. Its ability to produce antimicrobial compounds may contribute to its effectiveness in suppressing diseases in crops. The presence of a single replicon indicates a streamlined genome structure, which could facilitate efficient metabolic processes and adaptation to various environmental conditions. Understanding the traits of Pseudomonas chlororaphis subsp. aureofaciens 30-84 provides insight into its ecological role. As a member of the Pseudomonas genus, it is likely involved in nutrient cycling and may play a significant part in soil health. Its interactions with other microorganisms and plants can influence ecosystem dynamics, showcasing the importance of this bacterium beyond its agricultural utility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainsubsp. aureofaciens 30-84

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis subsp. aureofaciens 30-84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas chlororaphis subsp. aureofaciens 30-84


Gene Summary

Adenine Count

1236206 bp

Thymine Count

1233212 bp

Guanine Count

2092418 bp

Cytosine Count

2103185 bp

Genome Length

6666321 bp

Protein-coding Genes

5883 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system rele/pare family toxinPCHL3084_RS26695Not AvailableNegative6065766 - 606606511242.7
duf3828 domain-containing proteinPCHL3084_RS26700Not AvailablePositive6066237 - 606668616987.1
zinc-dependent alcohol dehydrogenase family proteinPCHL3084_RS26705Not AvailableNegative6066711 - 606772135474.4
arsr/smtb family transcription factorPCHL3084_RS26710Not AvailableNegative6067779 - 606807811056.4
copper-containing nitrite reductasePCHL3084_RS26715Not AvailableNegative6068146 - 606923439137.0
exodeoxyribonuclease vii small subunitPCHL3084_RS26720Not AvailablePositive6069460 - 60697028876.33
(2e,6e)-farnesyl diphosphate synthasePCHL3084_RS26725Not AvailablePositive6069699 - 607058631537.7
1-deoxy-d-xylulose-5-phosphate synthasePCHL3084_RS26730Not AvailablePositive6070698 - 607259668235.5
tonb-dependent receptor domain-containing proteinPCHL3084_RS26735Not AvailablePositive6072738 - 607462170352.1
cobalamin-binding proteinPCHL3084_RS26740Not AvailableNegative6074637 - 607543128775.1

Displaying genes 5441 – 5450 of 6016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.