Caldithrix abyssi DSM 13497

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi DSM 13497 is an anaerobic bacterium characterized by its single replicon, which is notable for its genetic simplicity. This organism is part of the diverse microbial community found in extreme environments, such as deep-sea hydrothermal vents, where it plays a role in biogeochemical processes. The anaerobic nature of Caldithrix abyssi suggests that it thrives in environments devoid of oxygen, relying on alternative metabolic pathways to sustain its growth and reproduction. This adaptation allows it to inhabit niches that are inhospitable to many other forms of life, highlighting its ecological significance in anaerobic ecosystems. The genomic information for Caldithrix abyssi is accessible under the accession NZ_CM001402.1, which provides a resource for researchers interested in studying its genetic makeup and potential applications. The existence of only one replicon indicates a streamlined genetic organization, which may contribute to its survival strategies in extreme conditions. In conclusion, Caldithrix abyssi DSM 13497 exemplifies the complexity and adaptability of microorganisms in anaerobic environments. Its specialized metabolic capabilities not only facilitate its survival in extreme conditions but also underscore its role in the microbial ecology of deep-sea ecosystems, where such anaerobes contribute to nutrient cycling and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainDSM 13497

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi DSM 13497 chromosome, whole genome shotgun

Gene Summary

Adenine Count

1356027 bp

Thymine Count

1364558 bp

Guanine Count

1121626 bp

Cytosine Count

1113028 bp

Genome Length

4955439 bp

Protein-coding Genes

3794 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCALAB_RS16945Not AvailableNegative4314667 - 431512517445.6
p-ii family nitrogen regulatorCALAB_RS16950Not AvailableNegative4315210 - 431555112537.3
efflux rnd transporter permease subunitCALAB_RS16955Not AvailableNegative4315614 - 4318775117497.0
efflux rnd transporter periplasmic adaptor subunitCALAB_RS16960Not AvailableNegative4318890 - 432044658332.2
tolc family proteinCALAB_RS16965Not AvailableNegative4320459 - 432170647502.4
hypothetical proteinCALAB_RS16970Not AvailableNegative4321703 - 432198410770.4
hypothetical proteinCALAB_RS16975Not AvailableNegative4322219 - 432282422052.4
duf6804 family proteinCALAB_RS16980Not AvailableNegative4322923 - 432324312483.9
hypothetical proteinCALAB_RS16985Not AvailableNegative4323310 - 432519372974.3
arnt family glycosyltransferaseCALAB_RS16990Not AvailablePositive4325720 - 432722558568.6

Displaying genes 3361 – 3370 of 3865 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.