Caldithrix abyssi DSM 13497

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi DSM 13497 is an anaerobic bacterium characterized by its single replicon, which is notable for its genetic simplicity. This organism is part of the diverse microbial community found in extreme environments, such as deep-sea hydrothermal vents, where it plays a role in biogeochemical processes. The anaerobic nature of Caldithrix abyssi suggests that it thrives in environments devoid of oxygen, relying on alternative metabolic pathways to sustain its growth and reproduction. This adaptation allows it to inhabit niches that are inhospitable to many other forms of life, highlighting its ecological significance in anaerobic ecosystems. The genomic information for Caldithrix abyssi is accessible under the accession NZ_CM001402.1, which provides a resource for researchers interested in studying its genetic makeup and potential applications. The existence of only one replicon indicates a streamlined genetic organization, which may contribute to its survival strategies in extreme conditions. In conclusion, Caldithrix abyssi DSM 13497 exemplifies the complexity and adaptability of microorganisms in anaerobic environments. Its specialized metabolic capabilities not only facilitate its survival in extreme conditions but also underscore its role in the microbial ecology of deep-sea ecosystems, where such anaerobes contribute to nutrient cycling and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainDSM 13497

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi DSM 13497 chromosome, whole genome shotgun

Gene Summary

Adenine Count

1356027 bp

Thymine Count

1364558 bp

Guanine Count

1121626 bp

Cytosine Count

1113028 bp

Genome Length

4955439 bp

Protein-coding Genes

3794 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-ribbon domain-containing proteinCALAB_RS09450Not AvailablePositive2372202 - 237306632737.3
pmeii family type ii restriction endonucleaseCALAB_RS09455Not AvailablePositive2373056 - 237378128169.8
mate family efflux transporterCALAB_RS09460Not AvailableNegative2373759 - 237513850413.9
uvrd-helicase domain-containing proteinCALAB_RS09465Not AvailablePositive2375391 - 2378615122036.0
redox-regulated atpase ychfCALAB_RS09470Not AvailablePositive2379471 - 238055040755.1
phoh family proteinCALAB_RS09475Not AvailablePositive2380624 - 238203654226.4
c25 family cysteine peptidaseCALAB_RS09480Not AvailableNegative2382167 - 2385700130393.0
arsr/smtb family transcription factorCALAB_RS09485Not AvailableNegative2385989 - 238633313294.5
tex family proteinCALAB_RS09490Not AvailablePositive2386723 - 238889181169.2
sigma-54-dependent transcriptional regulatorCALAB_RS09495Not AvailableNegative2389302 - 239068752796.1

Displaying genes 1881 – 1890 of 3865 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.