Solidesulfovibrio carbinoliphilus subsp. oakridgensis strain

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Solidesulfovibrio

Description

Solidesulfovibrio carbinoliphilus subsp. oakridgensis is a Gram-negative, anaerobic bacterium characterized by its rod shape. This strain is notable for having two replicons, which indicates a complex genomic structure that may contribute to its adaptability in anaerobic environments. The strain is cataloged with the accession numbers NZ_CM001368.1 and NZ_CM001369.1, which provide a basis for further genetic and functional studies. The Gram-negative classification suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that is significant for its interactions with the environment, including resistance to certain antibiotics and the ability to participate in various metabolic processes. Being anaerobic, Solidesulfovibrio carbinoliphilus subsp. oakridgensis thrives in environments devoid of oxygen, which is typical for many sulfate-reducing bacteria. These organisms play critical roles in biogeochemical cycles, particularly in the reduction of sulfates to sulfides, which can be essential for nutrient cycling in various ecosystems. The ecological insight into this strain highlights its potential role in anaerobic digestion processes and its contribution to the degradation of organic matter in such habitats.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusSolidesulfovibrio
SpeciesSolidesulfovibrio carbinoliphilus
Strainsubsp. oakridgensis strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Solidesulfovibrio carbinoliphilus subsp. oakridgensis strain

Gene Summary

Adenine Count

684874 bp

Thymine Count

690410 bp

Guanine Count

1360858 bp

Cytosine Count

1366353 bp

Genome Length

4102695 bp

Protein-coding Genes

3622 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phoh family proteinDFW101_RS00200Not AvailableNegative47604 - 4859036297.9
nfact rna binding domain-containing proteinDFW101_RS00205Not AvailableNegative48685 - 5022354899.3
rna polymerase-binding protein dksaDFW101_RS00210Not AvailableNegative50317 - 5067913802.3
sensor domain-containing diguanylate cyclaseDFW101_RS00215Not AvailablePositive50911 - 5198138776.3
gaf domain-containing proteinDFW101_RS00220Not AvailablePositive52149 - 5270920558.4
type i glyceraldehyde-3-phosphate dehydrogenaseDFW101_RS00225Not AvailablePositive52725 - 5374136916.3
heavy metal translocating p-type atpaseDFW101_RS00230Not AvailablePositive54044 - 5595164755.8
marr family winged helix-turn-helix transcriptional regulatorDFW101_RS00235Not AvailablePositive55959 - 5637215357.6
integrase core domain-containing proteinDFW101_RS18825Not AvailablePositive56500 - 5767245232.5
amp-binding proteinDFW101_RS00240Not AvailableNegative57926 - 5959963055.4

Displaying genes 81 – 90 of 3794 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.