Algoriphagus machipongonensis strain PR1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus machipongonensis strain PR1 is a Gram-negative, non-motile, aerobic bacterium characterized by its rod shape. This strain exhibits a mesophilic temperature range, with an optimal growth temperature of 29°C. It has a single replicon and does not form spores. The ecological role of Algoriphagus machipongonensis strain PR1 is particularly notable due to its association with hosts from the group Choanoflagellata. These protists are significant in aquatic ecosystems as they play a crucial role in nutrient cycling and serve as a food source for various organisms. The interaction between Algoriphagus machipongonensis and Choanoflagellata may suggest a specialized ecological niche where this bacterium could influence the health and function of its host, potentially affecting broader microbial community dynamics in its environment. Given the specific traits of strain PR1 and its association with choanoflagellates, further research could elucidate its role in aquatic habitats and its potential contributions to microbial diversity and ecological balance. The accession number for this strain is NZ_CM001023.1, providing a reference for further studies and data access related to this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus machipongonensis
Strainstrain PR1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Choanoflagellata
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus machipongonensis strain PR1


Gene Summary

Adenine Count

1459759 bp

Thymine Count

1474794 bp

Guanine Count

927619 bp

Cytosine Count

924552 bp

Genome Length

4787724 bp

Protein-coding Genes

3982 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor rhoALPR1_RS19965Not AvailablePositive4698105 - 469985065647.5
t9ss type a sorting domain-containing proteinALPR1_RS19970Not AvailablePositive4700127 - 470141647736.1
beta strand repeat-containing proteinALPR1_RS19975Not AvailablePositive4701811 - 4708518220249.0
hypothetical proteinALPR1_RS19980Not AvailableNegative4708586 - 4712689154521.0
rlua family pseudouridine synthaseALPR1_RS19985Not AvailableNegative4714460 - 471549439459.3
1-aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydraseALPR1_RS19990Not AvailablePositive4715551 - 471647434400.2
helix-turn-helix domain-containing proteinALPR1_RS19995Not AvailableNegative4716449 - 471709324601.0
excinuclease abc subunit uvrbALPR1_RS20000Not AvailableNegative4717116 - 471915577555.9
duf4105 domain-containing proteinALPR1_RS20005Not AvailableNegative4719219 - 472041846348.1
t9ss type a sorting domain-containing proteinALPR1_RS20010Not AvailablePositive4720457 - 472277284779.8

Displaying genes 4001 – 4010 of 4033 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.