Comamonas thiooxydans strain R2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Comamonas

Description

Comamonas thiooxydans strain R2 is a rod-shaped bacterium notable for its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure, which may be linked to its adaptability in various environments. The strain is cataloged under the accession number NZ_AP026738.1, providing a reference for genomic studies and further exploration. C. thiooxydans is recognized for its role in sulfur oxidation; it can utilize thiosulfate as an electron donor, contributing to biogeochemical sulfur cycles. This metabolic capability is particularly significant in environments where sulfur compounds are prevalent, and the bacterium may play a role in bioremediation processes or in the maintenance of ecological balance in sulfur-rich habitats. The presence of flagella suggests that C. thiooxydans strain R2 can navigate its environment effectively, which may enhance its ability to colonize and exploit various niches. In summary, Comamonas thiooxydans strain R2 exemplifies a microbe with specialized traits that enable it to thrive in specific ecological contexts, particularly those involving sulfur cycling. Its flagellated, rod-shaped morphology and streamlined genomic structure underscore its adaptability and potential ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas thiooxydans
Strainstrain R2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge; human gut; human intestinal tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Comamonas thiooxydans strain R2 chromosome, complete genome.

Gene Summary

Adenine Count

1148624 bp

Thymine Count

1149357 bp

Guanine Count

1807144 bp

Cytosine Count

1808972 bp

Genome Length

5914097 bp

Protein-coding Genes

5262 genes

Non-Coding Genes

256 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
guanine deaminaseCTR2_RS21225Not AvailableNegative4561096 - 456238847173.0
lysr family transcriptional regulatorCTR2_RS21230Not AvailableNegative4562632 - 456352832974.8
glutarate dioxygenase glahCTR2_RS21235Not AvailablePositive4563633 - 456455634873.2
alpha-hydroxy acid oxidaseCTR2_RS21240Not AvailablePositive4564657 - 456589844759.0
hit family proteinCTR2_RS21245Not AvailablePositive4565951 - 456639115820.1
adenosine deaminaseCTR2_RS21250Not AvailableNegative4566497 - 456754038289.9
aromatic ring-hydroxylating oxygenase subunit alphaCTR2_RS21255Not AvailableNegative4567696 - 456867035918.4
bmp family abc transporter substrate-binding proteinCTR2_RS21260Not AvailableNegative4568844 - 457000140962.6
bmp family abc transporter substrate-binding proteinCTR2_RS21265Not AvailableNegative4570196 - 457134140734.6
abc transporter permeaseCTR2_RS21270Not AvailableNegative4571394 - 457231432071.2

Displaying genes 4271 – 4280 of 5518 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC13579767
PeritonitisCausesPMC13579767
Wound infectionsCausesPMC13579767

Displaying health effects 1 – 3 of 3 in total