Comamonas thiooxydans strain R2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Comamonas

Description

Comamonas thiooxydans strain R2 is a rod-shaped bacterium notable for its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure, which may be linked to its adaptability in various environments. The strain is cataloged under the accession number NZ_AP026738.1, providing a reference for genomic studies and further exploration. C. thiooxydans is recognized for its role in sulfur oxidation; it can utilize thiosulfate as an electron donor, contributing to biogeochemical sulfur cycles. This metabolic capability is particularly significant in environments where sulfur compounds are prevalent, and the bacterium may play a role in bioremediation processes or in the maintenance of ecological balance in sulfur-rich habitats. The presence of flagella suggests that C. thiooxydans strain R2 can navigate its environment effectively, which may enhance its ability to colonize and exploit various niches. In summary, Comamonas thiooxydans strain R2 exemplifies a microbe with specialized traits that enable it to thrive in specific ecological contexts, particularly those involving sulfur cycling. Its flagellated, rod-shaped morphology and streamlined genomic structure underscore its adaptability and potential ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas thiooxydans
Strainstrain R2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge; human gut; human intestinal tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Comamonas thiooxydans strain R2 chromosome, complete genome.

Gene Summary

Adenine Count

1148624 bp

Thymine Count

1149357 bp

Guanine Count

1807144 bp

Cytosine Count

1808972 bp

Genome Length

5914097 bp

Protein-coding Genes

5262 genes

Non-Coding Genes

256 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter substrate-binding proteinCTR2_RS19945Not AvailablePositive4296725 - 429773236652.2
phosphogluconate dehydrataseCTR2_RS19950Not AvailablePositive4297832 - 429967965362.7
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseCTR2_RS19955Not AvailablePositive4299664 - 430031122260.1
cytochrome bd-i oxidase subunit cydxCTR2_RS19960Not AvailableNegative4300385 - 43005255355.56
cytochrome d ubiquinol oxidase subunit iiCTR2_RS19965Not AvailableNegative4300630 - 430178441962.3
cytochrome ubiquinol oxidase subunit iCTR2_RS19970Not AvailableNegative4301798 - 430338758686.3
amino acid abc transporter atp-binding/permease proteinCTR2_RS19975Not AvailableNegative4303419 - 430514361753.9
thiol reductant abc exporter subunit cyddCTR2_RS19980Not AvailableNegative4305140 - 430687061235.6
nad(p)h-dependent flavin oxidoreductaseCTR2_RS19985Not AvailableNegative4307111 - 430806733622.3
abc transporter substrate-binding proteinCTR2_RS19990Not AvailableNegative4308350 - 430948039952.2

Displaying genes 4071 – 4080 of 5518 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
BacteremiaCausesPMC13579767
PeritonitisCausesPMC13579767
Wound infectionsCausesPMC13579767

Displaying health effects 1 – 3 of 3 in total