Leptospira kobayashii strain E30

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Leptospiria

Order

Leptospirales

Family

Leptospiraceae

Genus

Leptospira

Description

Leptospira kobayashii strain E30 is a notable species within the genus Leptospira, characterized by the presence of flagella, which are essential for its motility. This trait is significant as flagella facilitate the organism's movement through aquatic environments, which is crucial for its survival and dissemination. The genomic structure of Leptospira kobayashii strain E30 is represented by three replicons. This multi-replicon arrangement can contribute to the organism's adaptability and genetic diversity, potentially allowing it to thrive in various ecological niches. The strain is cataloged under several accession numbers: NZ_AP025028.1, NZ_AP025029.1, and NZ_AP025030.1, which provide a standardized reference for researchers studying its genetic makeup and characteristics. Understanding the biology of Leptospira kobayashii strain E30 is vital, particularly in the context of its ecological interactions. The presence of flagella suggests that it may inhabit freshwater environments, where it can interact with other microorganisms and hosts. This ecological role may be significant for the transmission dynamics of leptospirosis, a disease caused by pathogenic Leptospira species. The strain's genetic composition, as indicated by its replicons, may also influence its pathogenic potential and interaction with the host immune system. Thus, studying Leptospira kobayashii strain E30 can provide insights into the broader ecological implications of leptospires in their environments.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassLeptospiria
OrderLeptospirales
FamilyLeptospiraceae
GenusLeptospira
SpeciesLeptospira kobayashii
Strainstrain E30

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Leptospira kobayashii strain E30
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leptospira kobayashii strain E30 plasmid pE30-1, complete

Gene Summary

Adenine Count

13858 bp

Thymine Count

13730 bp

Guanine Count

8918 bp

Cytosine Count

8907 bp

Genome Length

45413 bp

Protein-coding Genes

44 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (adenosine(37)-n6)-dimethylallyltransferase miaaDI077_RS15600Not AvailableNegative3469868 - 347075533511.3
fydln acid domain-containing proteinDI077_RS15605Not AvailableNegative3470874 - 347136217581.9
pyridoxine 5'-phosphate synthaseDI077_RS15610Not AvailablePositive3471468 - 347223528634.9
tetratricopeptide repeat proteinDI077_RS15615Not AvailableNegative3472204 - 347313935528.2
s41 family peptidaseDI077_RS15620Not AvailablePositive3473252 - 347508768503.3
l-aspartate oxidaseDI077_RS15625Not AvailablePositive3475084 - 347668558977.6
tyrosine-type recombinase/integraseDI077_RS15630Not AvailablePositive3477073 - 347817643316.8
reverse transcriptase domain-containing proteinDI077_RS15635Not AvailablePositive3478404 - 347997560213.9
hypothetical proteinDI077_RS15640Not AvailablePositive3480265 - 348069016037.4
hypothetical proteinDI077_RS15645Not AvailablePositive3480704 - 34809619591.32

Displaying genes 3161 – 3170 of 3948 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

18 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da
BASm0004014streptothricin FC19H37N8O8Chemical structure of streptothricin FNot available
Average505.551Da
Monoisotopic505.271789444Da
BASm0004015streptothricin DC31H63N12O10Chemical structure of streptothricin DNot available
Average763.916Da
Monoisotopic763.476268377Da

Displaying 1–10 of 18 metabolites

Health Effects

No health effects information available for this bacterium.