Escherichia coli strain KS-NP019

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KS-NP019 is a Gram-negative, rod-shaped bacterium that is a facultative anaerobe, thriving optimally at 37°C within a mesophilic temperature range. This strain exhibits mobility, characterized by the presence of flagella, and typically arranges itself in pairs or singles. Ecologically, KS-NP019 is associated with a broad range of hosts, including Homo sapiens, various livestock such as Bos taurus and Sus scrofa, as well as other vertebrates and invertebrates like Apis mellifera and Solanum lycopersicum. It demonstrates a free-living biotic relationship, indicating its capacity to exist independently in various environments. Clinically, this strain is significant due to its association with numerous health effects in humans, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like hemolytic uremic syndrome (HUS) and neonatal meningitis. The strain has been implicated in foodborne infections and complications related to pregnancy, underscoring its pathogenic potential. The presence of two replicons and two membranes also suggests a complex genetic structure, which may contribute to its adaptability and virulence. Overall, E. coli strain KS-NP019 exemplifies the intricate relationships between microbial pathogens and their hosts, highlighting the importance of understanding microbial diversity and its implications for human health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KS-NP019

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KS-NP019
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KS-NP019 chromosome, complete genome.

Gene Summary

Adenine Count

1275315 bp

Thymine Count

1270163 bp

Guanine Count

1315610 bp

Cytosine Count

1317672 bp

Genome Length

5178760 bp

Protein-coding Genes

4450 genes

Non-Coding Genes

635 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cellulose biosynthesis cyclic di-gmp-binding regulatory protein bcsbFFG67_RS14920Not AvailableNegative3079089 - 308142886097.7
udp-forming cellulose synthase catalytic subunitFFG67_RS14925Not AvailableNegative3081439 - 308405799790.3
cellulose biosynthesis protein bcsqFFG67_RS14930Not AvailableNegative3084054 - 308480627879.4
cellulose biosynthesis protein bcsrFFG67_RS14935Not AvailableNegative3084818 - 30850067018.28
cellulose biosynthesis c-di-gmp-binding protein bcseFFG67_RS14940Not AvailablePositive3085279 - 308685059431.5
cellulose biosynthesis protein bcsfFFG67_RS14945Not AvailablePositive3086847 - 30870387364.39
cellulose biosynthesis protein bcsgFFG67_RS14950Not AvailablePositive3087035 - 308871462035.3
type i toxin-antitoxin system toxin ldr family proteinFFG67_RS14955Not AvailableNegative3088801 - 30889083882.93
type i toxin-antitoxin system toxin ldr family proteinFFG67_RS14960Not AvailableNegative3089284 - 30893913882.93
type i toxin-antitoxin system toxin ldr family proteinFFG67_RS14965Not AvailableNegative3089767 - 30898743882.93

Displaying genes 3281 – 3290 of 5181 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total