Escherichia coli strain KS-NP019

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KS-NP019 is a Gram-negative, rod-shaped bacterium that is a facultative anaerobe, thriving optimally at 37°C within a mesophilic temperature range. This strain exhibits mobility, characterized by the presence of flagella, and typically arranges itself in pairs or singles. Ecologically, KS-NP019 is associated with a broad range of hosts, including Homo sapiens, various livestock such as Bos taurus and Sus scrofa, as well as other vertebrates and invertebrates like Apis mellifera and Solanum lycopersicum. It demonstrates a free-living biotic relationship, indicating its capacity to exist independently in various environments. Clinically, this strain is significant due to its association with numerous health effects in humans, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like hemolytic uremic syndrome (HUS) and neonatal meningitis. The strain has been implicated in foodborne infections and complications related to pregnancy, underscoring its pathogenic potential. The presence of two replicons and two membranes also suggests a complex genetic structure, which may contribute to its adaptability and virulence. Overall, E. coli strain KS-NP019 exemplifies the intricate relationships between microbial pathogens and their hosts, highlighting the importance of understanding microbial diversity and its implications for human health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KS-NP019

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KS-NP019
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KS-NP019 chromosome, complete genome.

Gene Summary

Adenine Count

1275315 bp

Thymine Count

1270163 bp

Guanine Count

1315610 bp

Cytosine Count

1317672 bp

Genome Length

5178760 bp

Protein-coding Genes

4450 genes

Non-Coding Genes

635 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator yeilFFG67_RS07625Not AvailablePositive1540412 - 154111026931.7
nupc/nupg family nucleoside cnt transporterFFG67_RS07630Not AvailableNegative1541178 - 154242843420.3
pseudouridine-5'-phosphate glycosidaseFFG67_RS07635Not AvailableNegative1542522 - 154346033059.0
pseudouridine kinaseFFG67_RS07640Not AvailableNegative1543448 - 154438933687.0
pts fructose transporter subunit iibcFFG67_RS07645Not AvailableNegative1544813 - 154650457478.6
1-phosphofructokinaseFFG67_RS07650Not AvailableNegative1546521 - 154745933757.6
fused pts fructose transporter subunit iia/hpr proteinFFG67_RS07655Not AvailableNegative1547459 - 154858939735.3
sugar efflux transporter setbFFG67_RS07660Not AvailablePositive1548957 - 155013842706.6
ykgj family cysteine cluster proteinFFG67_RS07665Not AvailableNegative1550135 - 15503898954.96
elongation factor p-like protein yeipFFG67_RS07670Not AvailablePositive1550544 - 155111621533.9

Displaying genes 1841 – 1850 of 5181 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total