Zymobacter palmae strain IAM14233

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Zymobacter

Description

Zymobacter palmae strain IAM14233 is a notable bacterium characterized by its unique habitat and host associations. This strain is primarily found in the rhizomes of plants, which are underground stems that serve as storage organs and play a crucial role in the vegetative reproduction of certain species. One of the key hosts for Zymobacter palmae is Zingiber officinale, commonly known as ginger. This association highlights the strain's ecological relevance and potential impact on the health and growth of ginger plants. Zymobacter palmae has a simple genomic structure with only one replicon, which may contribute to its adaptability in specific ecological niches. The strain is cataloged under the accession NZ_AP018933.1, providing a reference point for further research and characterization. The interaction between Zymobacter palmae and Zingiber officinale suggests a potential role in the rhizome's microbiome, possibly influencing nutrient cycling or plant health. Understanding the dynamics of such microbial associations can provide insights into the ecological balance within plant systems and may have implications for agricultural practices, particularly in enhancing the growth or resistance of ginger crops. The study of Zymobacter palmae could therefore contribute to broader research on plant-microbe interactions and the ecological roles of bacteria in terrestrial habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusZymobacter
SpeciesZymobacter palmae
Strainstrain IAM14233

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zingiber officinale
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zymobacter palmae strain IAM14233 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2481 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s2ZBT109_RS03480Not AvailablePositive777924 - 77865826910.5
translation elongation factor tsZBT109_RS03485Not AvailablePositive778976 - 77984531064.1
ump kinaseZBT109_RS03490Not AvailablePositive780085 - 78081326071.9
ribosome recycling factorZBT109_RS03495Not AvailablePositive780981 - 78153820829.9
polyprenyl diphosphate synthaseZBT109_RS03500Not AvailablePositive781543 - 78229827786.2
phosphatidate cytidylyltransferaseZBT109_RS03505Not AvailablePositive782291 - 78311229885.4
1-deoxy-d-xylulose-5-phosphate reductoisomeraseZBT109_RS03510Not AvailablePositive783221 - 78442342712.2
rip metalloprotease rsepZBT109_RS03515Not AvailablePositive784504 - 78585648572.6
outer membrane protein assembly factor bamaZBT109_RS03520Not AvailablePositive785961 - 78830386261.9
omph family outer membrane proteinZBT109_RS03525Not AvailablePositive788456 - 78897118986.6

Displaying genes 841 – 850 of 2691 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.