Zymobacter palmae strain IAM14233

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Zymobacter

Description

Zymobacter palmae strain IAM14233 is a notable bacterium characterized by its unique habitat and host associations. This strain is primarily found in the rhizomes of plants, which are underground stems that serve as storage organs and play a crucial role in the vegetative reproduction of certain species. One of the key hosts for Zymobacter palmae is Zingiber officinale, commonly known as ginger. This association highlights the strain's ecological relevance and potential impact on the health and growth of ginger plants. Zymobacter palmae has a simple genomic structure with only one replicon, which may contribute to its adaptability in specific ecological niches. The strain is cataloged under the accession NZ_AP018933.1, providing a reference point for further research and characterization. The interaction between Zymobacter palmae and Zingiber officinale suggests a potential role in the rhizome's microbiome, possibly influencing nutrient cycling or plant health. Understanding the dynamics of such microbial associations can provide insights into the ecological balance within plant systems and may have implications for agricultural practices, particularly in enhancing the growth or resistance of ginger crops. The study of Zymobacter palmae could therefore contribute to broader research on plant-microbe interactions and the ecological roles of bacteria in terrestrial habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusZymobacter
SpeciesZymobacter palmae
Strainstrain IAM14233

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zingiber officinale
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zymobacter palmae strain IAM14233 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2481 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna 2-thiouridine(34) synthase mnmaZBT109_RS02540Not AvailableNegative568787 - 56995042677.8
nudix domain-containing proteinZBT109_RS02545Not AvailableNegative570177 - 57065318212.6
pseudouridine synthaseZBT109_RS02550Not AvailableNegative570811 - 57147024626.6
atp-dependent clp protease adapter clpsZBT109_RS02555Not AvailablePositive571906 - 57229214462.8
atp-dependent clp protease atp-binding subunit clpaZBT109_RS02560Not AvailablePositive572319 - 57459583602.1
hypothetical proteinZBT109_RS13505Not AvailableNegative574702 - 57555632526.3
t6ss effector bth_i2691 family proteinZBT109_RS02570Not AvailableNegative575543 - 578992130946.0
translation initiation factor if-1ZBT109_RS02575Not AvailableNegative579110 - 5793469102.06
leucyl/phenylalanyl-trna--protein transferaseZBT109_RS02580Not AvailableNegative579646 - 58031725311.2
dna translocase ftskZBT109_RS02585Not AvailablePositive580544 - 584218133363.0

Displaying genes 651 – 660 of 2691 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.