Zymobacter palmae strain IAM14233

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Zymobacter

Description

Zymobacter palmae strain IAM14233 is a notable bacterium characterized by its unique habitat and host associations. This strain is primarily found in the rhizomes of plants, which are underground stems that serve as storage organs and play a crucial role in the vegetative reproduction of certain species. One of the key hosts for Zymobacter palmae is Zingiber officinale, commonly known as ginger. This association highlights the strain's ecological relevance and potential impact on the health and growth of ginger plants. Zymobacter palmae has a simple genomic structure with only one replicon, which may contribute to its adaptability in specific ecological niches. The strain is cataloged under the accession NZ_AP018933.1, providing a reference point for further research and characterization. The interaction between Zymobacter palmae and Zingiber officinale suggests a potential role in the rhizome's microbiome, possibly influencing nutrient cycling or plant health. Understanding the dynamics of such microbial associations can provide insights into the ecological balance within plant systems and may have implications for agricultural practices, particularly in enhancing the growth or resistance of ginger crops. The study of Zymobacter palmae could therefore contribute to broader research on plant-microbe interactions and the ecological roles of bacteria in terrestrial habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusZymobacter
SpeciesZymobacter palmae
Strainstrain IAM14233

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zingiber officinale
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zymobacter palmae strain IAM14233 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2481 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
feoc-like transcriptional regulatorZBT109_RS13695Not AvailableNegative451832 - 4520658324.2
fe(2+) transporter permease subunit feobZBT109_RS02040Not AvailableNegative452053 - 45435683658.3
ferrous iron transporter aZBT109_RS02045Not AvailableNegative454366 - 45466511011.3
alpha/beta hydrolaseZBT109_RS02050Not AvailablePositive455203 - 45599728608.3
Trna-metNot AvailableNot AvailablePositive456242 - 456318Not Available
septum site-determining protein mincZBT109_RS02060Not AvailablePositive456528 - 45726226250.7
septum site-determining protein mindZBT109_RS02065Not AvailablePositive457415 - 45823329661.7
cell division topological specificity factor mineZBT109_RS02070Not AvailablePositive458230 - 4584879894.98
tetratricopeptide repeat proteinZBT109_RS02075Not AvailableNegative458667 - 45953933004.1
t6ss effector bth_i2691 family proteinZBT109_RS02080Not AvailableNegative459496 - 462792122679.0

Displaying genes 551 – 560 of 2691 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.